sqnm-client.pl result for Sequenom genotype file: test.xls MARKER #Call #Fail Total %_OK Chr hg18_position NCBI_info rs10116 721 15 736 97.96 chr2 65350233 ACTR2 LOC10097 mrna-utr rs10115 721 15 736 97.96 chr3 133559819 ACPP LOC55 mrna-utr rs10117 716 20 736 97.28 chr5 137920069 HSPA9 LOC3313 reference coding-synonymous rs10110 722 14 736 98.10 chr9 139569403 WDR85 LOC92715 mrna-utr rs10111 659 77 736 89.54 chr11 118391327 RPS25 LOC6230 locus-region CCDC84 LOC338657 reference coding-synonymous rs10114 722 14 736 98.10 chr17 3652520 ITGAE LOC3682 intron rs10112 712 24 736 96.74 chr17 7706249 CYB5D1 LOC124637 mrna-utr rs10113 717 19 736 97.42 chr19 51804488 CALM3 LOC808 mrna-utr Overall success for 8 markers: 96.64% (5690 calls, 198 failures, 5888 attempts) ============================================= There were 15 duplicate samples detected. A summary of the duplicate analyses was written to file: test.xls_DUPL.txt File test.xls_gt.txt lists markers across the top, sample names in first column, and their genotypes in all others. Missing genotypes are blank. Each marker.txt file has six columns, tab-delimited: PLATE = local name for the multiplex/chip WELL_POSITION = 384-well format ASSAY_ID = SNP name GENOTYPE_ID = call (different formats available) homozygotes are listed as a single base or with two bases separated by a space, comma, or slash. DESCRIPTION = call description that includes an indication of confidence, where 'Conservative' and 'Moderate' are considered very good, 'aggressive' OK, and rest are not accepted for report, unless manually called. SAMPLE_ID = your submitted sample ID =============================================