BLASTN 2.0MP-WashU [23-Oct-2000] [sol7-ultra-L64 23:33:38 23-Oct-2000] Copyright (C) 1996-2000 Washington University, Saint Louis, Missouri USA. All Rights Reserved. Reference: Gish, W. (1996-2000) http://blast.wustl.edu Notice: this program and its default parameter settings are optimized to find nearly identical sequences rapidly. To identify weak similarities encoded in nucleic acid, use BLASTX, TBLASTN or TBLASTX. Query= 31_E93_M13R.Seq (871 letters) Database: /seq/blast/nt 640,415 sequences; 2,087,985,497 total letters. Searching....10....20....30....40....50....60....70....80....90....100% done Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N gi|6983841|dbj|AB004064.1|AB004064 Homo sapiens mRNA for ... 665 3.4e-23 1 gi|1632801|emb|X99256.1|HLMITCSEQ Hylobates lar complete ... 648 6.3e-22 1 gi|5835820 ref|NC_002082.1| Hylobates lar mitochondrion, ... 648 6.3e-22 1 gi|643679|dbj|D38113.1|CHPMTB Pan troglodytes mitochondri... 648 6.3e-22 1 gi|5835121 ref|NC_001643.1| Pan troglodytes mitochondrion... 648 6.3e-22 1 gi|1262390|emb|X93335.1|PTMITG Pan troglodytes mitochondr... 648 6.3e-22 1 gi|1666193|emb|X97336.1|RUMTGENOM Rhinoceros unicornis co... 645 8.7e-22 1 gi|5835331 ref|NC_001779.1| R.unicornis complete mitochon... 645 8.7e-22 1 gi|6689043|emb|AJ010812.1|PTA010812 Pecari tajacu mitocho... 632 1.2e-21 1 gi|833948|gb|S75063.1|S75063 16S rRNA {cytoplasmic clone ... 605 6.4e-21 1 WARNING: Descriptions of 322 database sequences were not reported due to the limiting value of parameter V = 10. >gi|6983841|dbj|AB004064.1|AB004064 Homo sapiens mRNA for tomoregulin, complete cds Length = 1627 Minus Strand HSPs: Score = 665 (105.8 bits), Expect = 3.4e-23, P = 3.4e-23 Identities = 179/230 (77%), Positives = 179/230 (77%), Strand = Minus / Plus Query: 368 TTATTCTNGTCCCTTTGCACAGG-AGNA-TTTAANGTANATANANCCCGNCCCGNATTAC 311 || ||| |||| || | ||||| || | ||| | ||| ||| | ||| || | ||||| Sbjct: 1226 TTTCTCTTGTCCTTTCGTACAGGGAGGAATTTGAAGTAGATAGAAACCGACCTGGATTAC 1285 Query: 310 TCCTGTGTGAACTCANNTCG-GTAGC-CTTTAATCGTTGAACAAACGANCCTTTAATNGC 253 ||| || |||||||| || |||| ||||||||||||||||||||| |||||||| || Sbjct: 1286 TCCGGTCTGAACTCAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCTTTAATAGC 1345 Query: 252 GGG-GC-CCATCGGGATGTCCTGATCCACCCATCNAGGTNGTAACCCCCAATTGTTNATA 195 || || ||||||||||||||||||||| | ||| |||| |||| ||| | ||||| ||| Sbjct: 1346 GGCTGCACCATCGGGATGTCCTGATCCAAC-ATCGAGGTCGTAAACCCTA-TTGTTGATA 1403 Query: 194 NGGNTCTNTAGAANAGNATNGCGCNGTTA-CCCTAAGGGTAAGNTTGTTC 146 || || ||||| || || |||| |||| ||||| |||||| |||||| Sbjct: 1404 TGGA-CTCTAGAATAGGATTGCGCTGTTATCCCTA-GGGTAA-CTTGTTC 1450 >gi|1632801|emb|X99256.1|HLMITCSEQ Hylobates lar complete mitochondrial DNA sequence Length = 16,472 Plus Strand HSPs: Score = 648 (103.3 bits), Expect = 6.3e-22, P = 6.3e-22 Identities = 190/259 (73%), Positives = 190/259 (73%), Strand = Plus / Plus Query: 117 TGCNTTATACCTAATTACTTATTGGGTNNGAACAANCTTACCCTTAGGG-TAACNGCGCN 175 ||| | ||| ||| |||| | |||||| ||||||| |||| |||| |||| Sbjct: 2307 TGCAATTGACCCAATAACTTGATCAA-CGGAACAAG-TTACCCT-AGGGATAACAGCGCA 2363 Query: 176 ATNCTNTTCTANAGANCCNTATNAACAATTGGGGGTTACNACCTNGATGGGTGGATCAGG 235 || || ||||| || || ||| |||||| ||| |||| |||| |||| ||||||||| Sbjct: 2364 ATCCTATTCTAGAG-TCCATATCAACAATAGGGT-TTACGACCTCGATGT-TGGATCAGG 2420 Query: 236 ACATCCCGATGG-GCC-CCGCNATTAAAGGNTCGTTTGTTCAACGATTAAAGGC-TACC- 291 |||||||||||| || |||| || ||||| ||||||||||||||||||||| | ||| Sbjct: 2421 ACATCCCGATGGTGCAGCCGCTATCAAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGT 2480 Query: 292 GANNTGAGTTCACACAGGAGTAATNCGGGNCGGGNTNTATNTACNTTAAATN-CTCC-TG 349 || |||||||| || |||||||| | || ||| | ||| | || || |||| || Sbjct: 2481 GATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTTTCTATCTGTTCTATATTTCTCCCTG 2540 Query: 350 TGCAAAGGGACNAGAATAA 368 | | || |||| ||| || Sbjct: 2541 TACGAAAGGACAAGAGAAA 2559 >gi|5835820 ref|NC_002082.1| Hylobates lar mitochondrion, complete genome Length = 16,472 Plus Strand HSPs: Score = 648 (103.3 bits), Expect = 6.3e-22, P = 6.3e-22 Identities = 190/259 (73%), Positives = 190/259 (73%), Strand = Plus / Plus Query: 117 TGCNTTATACCTAATTACTTATTGGGTNNGAACAANCTTACCCTTAGGG-TAACNGCGCN 175 ||| | ||| ||| |||| | |||||| ||||||| |||| |||| |||| Sbjct: 2307 TGCAATTGACCCAATAACTTGATCAA-CGGAACAAG-TTACCCT-AGGGATAACAGCGCA 2363 Query: 176 ATNCTNTTCTANAGANCCNTATNAACAATTGGGGGTTACNACCTNGATGGGTGGATCAGG 235 || || ||||| || || ||| |||||| ||| |||| |||| |||| ||||||||| Sbjct: 2364 ATCCTATTCTAGAG-TCCATATCAACAATAGGGT-TTACGACCTCGATGT-TGGATCAGG 2420 Query: 236 ACATCCCGATGG-GCC-CCGCNATTAAAGGNTCGTTTGTTCAACGATTAAAGGC-TACC- 291 |||||||||||| || |||| || ||||| ||||||||||||||||||||| | ||| Sbjct: 2421 ACATCCCGATGGTGCAGCCGCTATCAAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGT 2480 Query: 292 GANNTGAGTTCACACAGGAGTAATNCGGGNCGGGNTNTATNTACNTTAAATN-CTCC-TG 349 || |||||||| || |||||||| | || ||| | ||| | || || |||| || Sbjct: 2481 GATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTTTCTATCTGTTCTATATTTCTCCCTG 2540 Query: 350 TGCAAAGGGACNAGAATAA 368 | | || |||| ||| || Sbjct: 2541 TACGAAAGGACAAGAGAAA 2559 >gi|643679|dbj|D38113.1|CHPMTB Pan troglodytes mitochondrial DNA, complete sequence Length = 16,554 Plus Strand HSPs: Score = 648 (103.3 bits), Expect = 6.3e-22, P = 6.3e-22 Identities = 194/268 (72%), Positives = 194/268 (72%), Strand = Plus / Plus Query: 108 ATTCATTCATGCNTTATACCTAATTACTTATTGGGTNNGAACAANCTTACCCTTAGGG-T 166 ||| | ||| | | | | ||| |||| |||||| ||||||| |||| | Sbjct: 2299 ATTACTACATCCAATTGATCCAATGACTTGACCAA-CGGAACAAG-TTACCCT-AGGGAT 2355 Query: 167 AACNGCGCNATNCTNTTCTANAGANCCNTATNAACAATTGGGGGTTACNACCTNGATGGG 226 ||| |||| || || ||| | || || ||| |||||| ||| |||| |||| |||| Sbjct: 2356 AACAGCGCAATCCTATTCCAGAG-TCCATATCAACAATAGGGT-TTACGACCTCGATGT- 2412 Query: 227 TGGATCAGGACATCCCGATGG-GCC-CCGCNATTAAAGGNTCGTTTGTTCAACGATTAAA 284 ||||||||||||||||||||| || |||| |||||||| |||||||||||||||||||| Sbjct: 2413 TGGATCAGGACATCCCGATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAAA 2472 Query: 285 GGC-TACC-GANNTGAGTTCACACAGGAGTAATNCGGGNCGGGNTNTATNTACNTTAAAT 342 | | ||| || |||||||| || |||||||| | || ||| | ||| | ||||| Sbjct: 2473 GTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTTTCTATCTGTTCTAAAT 2532 Query: 343 N-CTCC-TGTGCAAAGGGACNAGAATAA 368 |||| ||| | || |||| ||| || Sbjct: 2533 TTCTCCCTGTACGAAAGGACAAGAGAAA 2560 >gi|5835121 ref|NC_001643.1| Pan troglodytes mitochondrion, complete genome Length = 16,554 Plus Strand HSPs: Score = 648 (103.3 bits), Expect = 6.3e-22, P = 6.3e-22 Identities = 194/268 (72%), Positives = 194/268 (72%), Strand = Plus / Plus Query: 108 ATTCATTCATGCNTTATACCTAATTACTTATTGGGTNNGAACAANCTTACCCTTAGGG-T 166 ||| | ||| | | | | ||| |||| |||||| ||||||| |||| | Sbjct: 2299 ATTACTACATCCAATTGATCCAATGACTTGACCAA-CGGAACAAG-TTACCCT-AGGGAT 2355 Query: 167 AACNGCGCNATNCTNTTCTANAGANCCNTATNAACAATTGGGGGTTACNACCTNGATGGG 226 ||| |||| || || ||| | || || ||| |||||| ||| |||| |||| |||| Sbjct: 2356 AACAGCGCAATCCTATTCCAGAG-TCCATATCAACAATAGGGT-TTACGACCTCGATGT- 2412 Query: 227 TGGATCAGGACATCCCGATGG-GCC-CCGCNATTAAAGGNTCGTTTGTTCAACGATTAAA 284 ||||||||||||||||||||| || |||| |||||||| |||||||||||||||||||| Sbjct: 2413 TGGATCAGGACATCCCGATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAAA 2472 Query: 285 GGC-TACC-GANNTGAGTTCACACAGGAGTAATNCGGGNCGGGNTNTATNTACNTTAAAT 342 | | ||| || |||||||| || |||||||| | || ||| | ||| | ||||| Sbjct: 2473 GTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTTTCTATCTGTTCTAAAT 2532 Query: 343 N-CTCC-TGTGCAAAGGGACNAGAATAA 368 |||| ||| | || |||| ||| || Sbjct: 2533 TTCTCCCTGTACGAAAGGACAAGAGAAA 2560 >gi|1262390|emb|X93335.1|PTMITG Pan troglodytes mitochondrial DNA, complete genome (isolate Jenny) Length = 16,561 Plus Strand HSPs: Score = 648 (103.3 bits), Expect = 6.3e-22, P = 6.3e-22 Identities = 194/268 (72%), Positives = 194/268 (72%), Strand = Plus / Plus Query: 108 ATTCATTCATGCNTTATACCTAATTACTTATTGGGTNNGAACAANCTTACCCTTAGGG-T 166 ||| | ||| | | | | ||| |||| |||||| ||||||| |||| | Sbjct: 2306 ATTACTACATCCAATTGATCCAATGACTTGACCAA-CGGAACAAG-TTACCCT-AGGGAT 2362 Query: 167 AACNGCGCNATNCTNTTCTANAGANCCNTATNAACAATTGGGGGTTACNACCTNGATGGG 226 ||| |||| || || ||| | || || ||| |||||| ||| |||| |||| |||| Sbjct: 2363 AACAGCGCAATCCTATTCCAGAG-TCCATATCAACAATAGGGT-TTACGACCTCGATGT- 2419 Query: 227 TGGATCAGGACATCCCGATGG-GCC-CCGCNATTAAAGGNTCGTTTGTTCAACGATTAAA 284 ||||||||||||||||||||| || |||| |||||||| |||||||||||||||||||| Sbjct: 2420 TGGATCAGGACATCCCGATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACGATTAAA 2479 Query: 285 GGC-TACC-GANNTGAGTTCACACAGGAGTAATNCGGGNCGGGNTNTATNTACNTTAAAT 342 | | ||| || |||||||| || |||||||| | || ||| | ||| | ||||| Sbjct: 2480 GTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTTTCTATCTGTTCTAAAT 2539 Query: 343 N-CTCC-TGTGCAAAGGGACNAGAATAA 368 |||| ||| | || |||| ||| || Sbjct: 2540 TTCTCCCTGTACGAAAGGACAAGAGAAA 2567 >gi|1666193|emb|X97336.1|RUMTGENOM Rhinoceros unicornis complete mitochondrial genome Length = 16,829 Plus Strand HSPs: Score = 645 (102.8 bits), Expect = 8.7e-22, P = 8.7e-22 Identities = 211/295 (71%), Positives = 211/295 (71%), Strand = Plus / Plus Query: 84 TCCCGGAATTTCCGGGTCGACATTATT-CATTCATGCNTT-ATACCTAATTACTTATTGG 141 | || || || | | || | | |||| ||| || || || || ||||| | || Sbjct: 2305 TTCCAGACTTACTAG-TCAAAAATATTACAT-CACTTATTGAT-CCAAATTATTGATCAA 2361 Query: 142 GTNNGAACAANCTTACCCTTAGGG-TAACNGCGCNATNCTNTTCTANAGANCCNTATNAA 200 |||||| ||||||| |||| |||| |||| || || ||||| || || ||| | Sbjct: 2362 --CGGAACAAG-TTACCCT-AGGGATAACAGCGCAATCCTATTCTAGAG-TCCATATCGA 2416 Query: 201 CAATTGGGGGTTACNACCTNGATGGGTGGATCAGGACATCCCGATGG-GCC-CCGCNATT 258 |||| ||| |||| |||| |||| |||||||||||||||| |||| || |||| ||| Sbjct: 2417 CAATAGGGT-TTACGACCTCGATGT-TGGATCAGGACATCCCAATGGTGCAACCGCTATT 2474 Query: 259 AAAGGNTCGTTTGTTCAACGATTAAAGGC-TACC-GANNTGAGTTCACACAGGAGTAATN 316 || || ||||||||||||||||||||| | ||| || |||||||| || |||||||| Sbjct: 2475 AATGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGAGTTCAGACCGGAGTAATC 2534 Query: 317 CGGGNCGGGNTNTATNTACNTTAA-ATN-CTCCT-GTGCAAAGGGACNAGAATAA 368 | || ||| | ||| || |||| || |||| || | || ||| |||| || Sbjct: 2535 CAGGTCGGTTTCTATCTA-TTTAATATTTCTCCCAGTACGAAAGGAAAAGAAAAA 2588 >gi|5835331 ref|NC_001779.1| R.unicornis complete mitochondrial genome Length = 16,829 Plus Strand HSPs: Score = 645 (102.8 bits), Expect = 8.7e-22, P = 8.7e-22 Identities = 211/295 (71%), Positives = 211/295 (71%), Strand = Plus / Plus Query: 84 TCCCGGAATTTCCGGGTCGACATTATT-CATTCATGCNTT-ATACCTAATTACTTATTGG 141 | || || || | | || | | |||| ||| || || || || ||||| | || Sbjct: 2305 TTCCAGACTTACTAG-TCAAAAATATTACAT-CACTTATTGAT-CCAAATTATTGATCAA 2361 Query: 142 GTNNGAACAANCTTACCCTTAGGG-TAACNGCGCNATNCTNTTCTANAGANCCNTATNAA 200 |||||| ||||||| |||| |||| |||| || || ||||| || || ||| | Sbjct: 2362 --CGGAACAAG-TTACCCT-AGGGATAACAGCGCAATCCTATTCTAGAG-TCCATATCGA 2416 Query: 201 CAATTGGGGGTTACNACCTNGATGGGTGGATCAGGACATCCCGATGG-GCC-CCGCNATT 258 |||| ||| |||| |||| |||| |||||||||||||||| |||| || |||| ||| Sbjct: 2417 CAATAGGGT-TTACGACCTCGATGT-TGGATCAGGACATCCCAATGGTGCAACCGCTATT 2474 Query: 259 AAAGGNTCGTTTGTTCAACGATTAAAGGC-TACC-GANNTGAGTTCACACAGGAGTAATN 316 || || ||||||||||||||||||||| | ||| || |||||||| || |||||||| Sbjct: 2475 AATGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGAGTTCAGACCGGAGTAATC 2534 Query: 317 CGGGNCGGGNTNTATNTACNTTAA-ATN-CTCCT-GTGCAAAGGGACNAGAATAA 368 | || ||| | ||| || |||| || |||| || | || ||| |||| || Sbjct: 2535 CAGGTCGGTTTCTATCTA-TTTAATATTTCTCCCAGTACGAAAGGAAAAGAAAAA 2588 >gi|6689043|emb|AJ010812.1|PTA010812 Pecari tajacu mitochondrial tRNA-Val and 16S rRNA genes Length = 1636 Plus Strand HSPs: Score = 632 (100.9 bits), Expect = 1.2e-21, P = 1.2e-21 Identities = 198/278 (71%), Positives = 198/278 (71%), Strand = Plus / Plus Query: 99 GTCGACATTATTCATTCATGCNTT-ATACCTAATTACTTATTGGGTNNGAACAANCTTAC 157 ||| | | ||||| |||| || || || ||||| || | |||||| |||| Sbjct: 1278 GTCAAAAGTATTCCATCATTTATTGAT-CCAAATTAATTGATCAA-CGGAACAAG-TTAC 1334 Query: 158 CCTTAGGG-TAACNGCGCNATNCTNTTCTANAGANCCNTATNAACAATTGGGGGTTACNA 216 ||| |||| |||| |||| || || ||||| || || ||| ||||| ||| |||| | Sbjct: 1335 CCT-AGGGATAACAGCGCCATCCTATTCTAGAG-TCCCTATCGACAATAGGGT-TTACGA 1391 Query: 217 CCTNGATGGGTGGATCAGGACATCCCGATGG-GCC-CCGCNATTAAAGGNTCGTTTGTTC 274 ||| |||| |||||||||| ||||| |||| || |||| |||||||| |||||||||| Sbjct: 1392 CCTCGATGT-TGGATCAGGATATCCCAATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTC 1450 Query: 275 AACGATTAAAGGC-TACC-GANNTGAGTTCACACAGGAGTAATNCGGGNCGGGNTNTATN 332 |||||||||| | ||| || |||||||| || |||| ||| | || ||| | ||| Sbjct: 1451 AACGATTAAAATCCTACGTGATCTGAGTTCAGACCGGAGCAATCCAGGTCGGTTTCTATC 1510 Query: 333 TACNTTAAATN-CTCCT-GTGCAAAGGGACNAGAATAA 368 || | | | |||| || | || |||| ||| || Sbjct: 1511 TATTATGAGTTTCTCCCAGTACGAAAGGACAAGAGAAA 1548 >gi|833948|gb|S75063.1|S75063 16S rRNA {cytoplasmic clone pCmt.12, tandem repeat macrosatellite} [Felis catus=domestic cats, lymphocytes, fibroblasts, Mitochondrial, 612 nt] Length = 612 Plus Strand HSPs: Score = 605 (96.8 bits), Expect = 6.4e-21, P = 6.4e-21 Identities = 199/281 (70%), Positives = 199/281 (70%), Strand = Plus / Plus Query: 99 GTCGACATTATT-CATTCATGCNTT-ATACCTAATTACTTATTGGGTNNGAACAANCTTA 156 ||||| | || | ||| || || || || || ||| | |||||| ||| Sbjct: 289 GTCGAAAGTACTACAT-CACTTATTGAT-CCAAAAACCTTGATCAA-CGGAACAAG-TTA 344 Query: 157 CCCTTAGGG-TAACNGCGCNATNCTNTTCTANAGANCCNTATNAACAATTGGGGGTTACN 215 |||| |||| |||| |||| || || || | || || ||| ||||| ||| |||| Sbjct: 345 CCCT-AGGGATAACAGCGCAATCCTATTTCAGAG-TCCATATCGACAATAGGGT-TTACG 401 Query: 216 ACCTNGATGGGTGGATCAGGACATCCCGATGG-GCCCC-GCNATTAAAGGNTCGTTTGTT 273 |||| |||| ||||||||||||||||||||| || | || || ||||| ||||||||| Sbjct: 402 ACCTCGATGT-TGGATCAGGACATCCCGATGGTGCAGCAGCTATCAAAGGTTCGTTTGTT 460 Query: 274 CAACGATTAAAGGC-TACC-GANNTGAGTTCACACAGGAGTAATNCGGGNCGGGNTNTAT 331 |||||||||||| | ||| || |||||||| || |||||||| | || ||| | ||| Sbjct: 461 CAACGATTAAAGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTTTCTAT 520 Query: 332 NTACNTTA-AA-TNCTCCT-GTGCAAAGGGACNAGAATAAG 369 || | | || | |||| || | || |||| ||| ||| Sbjct: 521 CTATTTAATAACTTCTCCCAGTACGAAAGGACAAGAG-AAG 560 WARNING: HSPs involving 322 database sequences were not reported due to the limiting value of parameter B = 10. Parameters: cpus=1 gi filter=dust hitdist=40 V=10 B=10 ctxfactor=2.00 E=10 Query ----- As Used ----- ----- Computed ---- Strand MatID Matrix name Lambda K H Lambda K H +1 0 +5,-4 0.192 0.173 0.357 same same same Q=10,R=10 0.104 0.0151 0.0600 n/a n/a n/a -1 0 +5,-4 0.192 0.173 0.357 same same same Q=10,R=10 0.104 0.0151 0.0600 n/a n/a n/a Query Strand MatID Length Eff.Length E S W T X E2 S2 +1 0 871 871 10. 211 11 n/a 73 0.021 82 92 0.024 122 -1 0 871 871 10. 211 11 n/a 73 0.021 82 92 0.024 122 Statistics: Database: /seq/blast/nt Title: /seq/blast/nt Posted: 10:06:43 AM CDT Jul 26, 2000 Format: BLAST-1.4 # of letters in database: 2,087,985,497 # of sequences in database: 640,415 # of database sequences satisfying E: 332 No. of states in DFA: 208 (416 KB) Total size of DFA: 428 KB (448 KB) Time to generate neighborhood: 0.06u 0.03s 0.09t Elapsed: 00:00:01 No. of threads or processors used: 1 Search cpu time: 26.49u 8.34s 34.83t Elapsed: 00:00:50 Total cpu time: 26.86u 8.58s 35.44t Elapsed: 00:00:51 Start: Mon Oct 30 06:03:31 2000 End: Mon Oct 30 06:04:22 2000 WARNINGS ISSUED: 2