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COGENE: cDNA Libraries
Clones from 4th Week, Posterior Rhombomere

Genes in 4th Week Posterior Rhombomere

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Clone ID GenBank Acc/GI UniGene Description Significance
Level
4EPR-28NM_016046 LOC51013 Homo sapiens CGI-108 protein mRNA --
4EPR-8 NM_01614 ACTG1 Homo sapiens actin, gamma1 mRNA--
4EPR-10 NM_006406 A0E372 Homo sapiens thioredoxin peroxidase (antioxidant enzyme) mRNA --
4EPR-17 NM_001515 GTF2H2 Homo sapiens general transcription factor IIH, polypeptide 2 (44kD subunit) mRNA --
4EPR-19NM_004500 HNRPC Homo sapiens heterogeneous nuclear ribonucleoprotein C (C1/C2) mRNA --
4EPR-20 NM_003707 RUVBL1 Homo sapiens ruvB (E coli homolog)-like 1 mRNA--
4EPR-11 J03592 HUMTLCA Human ADP/ATP translocase mRNA, 3' end --
4PR-C12-cDNA-std-52 8923268NM_017746.1Homo sapiens hypothetical protein FLJ20287 (FLJ20287), mRNA2.1e-97
4PR-C12-cDNA-std-54 6706212HSA250235Homo sapiens FECH gene for ferrochelatase, exons 1-11 6.8e-16
4PR-C12-cDNA-std-56 4505620NM_002567.1Homo sapiens prostatic binding protein (PBP) mRNA 5.4e-103
4PR-C12-cDNA-std-BC09 11440336 XM_006460.1 Homo sapiens ribosomal protein S25 (RPS25), mRNA 1.4e-74
4PR-C12-cDNA-std-BC10 3834383 AF034091 Homo sapiens nuclear localization signal containing protein deleted in Velo-Cardio-Facial syndrome (Nlvcf) mRNA, complete cds 1.3e-34
4PR-C12-cDNA-std-BC11 11434987 XM_003188.1 Homo sapiens NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5 (16kD, SGDH) (NDUFB5), mRNA 1.8e-98
4PR-C12-cDNA-std-BC13 4504278 NM_002107.1 Homo sapiens H3 histone, family 3A (H3F3A), mRNA 1.1e-33
4PR-C12-cDNA-std-BC15 11419355 XM_004643.1 Homo sapiens putative methyltransferase (HASJ4442), mRNA 1.2e-51
4PR-C12-cDNA-std-BC16 4506632 NM_000993.1 Homo sapiens ribosomal protein L31 (RPL31), mRNA 1.6e-49
4PR-C12-cDNA-std-BC17 3153208 AF013759 Homo sapiens calumein (Calu) mRNA, complete cds 1.7e-58
4PR-C12-cDNA-std-BC21 558843 HSU15173 Homo sapiens BCL2/adenovirus E1B 19kD-interacting protein 2 (BNIP2) mRNA, complete cds 1.2e-22
4PR-C12-cDNA-std-BC22 11418281 XM_010044.1 Homo sapiens fibulin 1 (FBLN1), mRNA 7.4e-59
4PR-C12-cDNA-std-BC26 5453596 NM_006135.1 Homo sapiens capping protein (actin filament) muscle Z-line, alpha 1 (CAPZA1), mRNA 7.5e-22
4PR-C12-cDNA-std-BC28 4506678 NM_001014.1 Homo sapiens ribosomal protein S10 (RPS10), mRNA 2.4e-21
4PR-C12-cDNA-std-BC32 4894365 AF067166 Homo sapiens NADH-ubiquinone oxidoreductase AGGG subunit precursor homolog mRNA, nuclear gene encoding mitochondrial protein, complete cds 5.3e-45
4PR-C12-cDNA-std-BC34 6715605 NM_005330.2 Homo sapiens hemoglobin, epsilon 1 (HBE1), mRNA 7.4e-36
4PR-C12-cDNA-std-BC36 7532779 AF105253 Homo sapiens neuroendocrine secretory protein 55 mRNA, complete cds 3.4e-11
4PR-C12-cDNA-std-BC40 4504446 NM_002137.1 Homo sapiens heterogeneous nuclear ribonucleoprotein A2/B1 (HNRPA2B1), mRNA 1.3e-51
4PR-C12-cDNA-std-BC44 4506678 NM_001014.1 Homo sapiens ribosomal protein S10 (RPS10), mRNA 7.8e-22
4PR-C12-cDNA-std-BC45 5531804 AF078845 Homo sapiens 16.7Kd protein mRNA, complete cds 7.8e-63
4PR-C12-cDNA-std-BC47 3342003 AF054181 Homo sapiens CI-MNLL homolog gene mRNA, complete cds 2.0e-54
4PR-C12-cDNA-std-BC54 6841523 AF161500 Homo sapiens HSPC151 mRNA, complete cds 1.5e-46
4PR-C12-cDNA-std-BC56 5032212 NM_005827.1 Homo sapiens UDP-galactose transporter related (UGTREL1), mRNA 2.8e-53
4PR-C12-cDNA-std-BC57 11431943 XM_008044.1 Homo sapiens procollagen (type III) N-endopeptidase (PCOLN3), mRNA 8.0e-38
4PR-C12-cDNA-std-BC66 11430427 XM_002637.1 Homo sapiens ribosomal protein L37a (RPL37A), mRNA 5.5e-52
4PR-C12-cDNA-std-BC73 36141 HSRPRNA H.sapiens mRNA for ribosomal protein (homologuous to yeast S24) 4.0e-28
4PR-C12-cDNA-std-BC74 36141 HSRPRNA H.sapiens mRNA for ribosomal protein (homologuous to yeast S24) 3.3e-22
4PR-C12-cDNA-std-BC78 11436054 XM_006927.1 Homo sapiens solute carrier family 2 (facilitated glucose transporter), member 3 (SLC2A3), mRNA 2.0e-41
4PR-C12-cDNA-std-BC79 11425858 XM_008775.1 Homo sapiens thioredoxin-like, 32kD (TXNL), mRNA 9.1e-81
4PR-C12-cDNA-std-BC82 292442 HUMRPS20 Homo sapiens ribosomal protein S20 (RPS20) mRNA, complete cds 4.3e-80
4PR-C12-cDNA-std-BC88 8659565 NM_000516.2 Homo sapiens guanine nucleotide binding protein (G protein), alpha stimulating activity polypeptide 1 (GNAS1), mRNA 1.4e-14
4PR-C12-cDNA-std-BC90 6996445 HSA250915 Homo sapiens p10 gene for chaperonin 10 (Hsp10 protein) and p60 gene for chaperonin 60 (Hsp60 protein) 1.3e-26
4PR-C12-cDNA-std-126 1550769 HSID4 H.sapiens mRNA for ID4 protein 1.5e-30
4PR-C12-cDNA-std-128 5764542 AF171055 Homo sapiens thioredoxin reductase TR2 mRNA, partial cds 3.6e-56
4PR-C12-cDNA-std-135 5902101 NM_006938.1 Homo sapiens small nuclear ribonucleoprotein D1 polypeptide (16kD) (SNRPD1), mRNA 1.2e-50
4PR-C12-cDNA-std-201 12736949 XM_006522.2 Homo sapiens Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30 (FAU), mRNA 5.3e-46
4PR-C12-cDNA-std-202 4506628 NM_000992.1 Homo sapiens ribosomal protein L29 (RPL29), mRNA 1.1e-60
4PR-C12-cDNA-std-207 4506678 NM_001014.1 Homo sapiens ribosomal protein S10 (RPS10), mRNA 5.2e-23
4PR-C12-cDNA-std-208 8659565 NM_000516.2 Homo sapiens guanine nucleotide binding protein (G protein), alpha stimulating activity polypeptide 1 (GNAS1), mRNA 2.3e-22
4PR-C12-cDNA-std-211 13177771 BC003655 Homo sapiens, ribosomal protein, large, P0, clone MGC:4770, mRNA, complete cds 3.2e-44
4PR-C12-cDNA-std-216 12742978 XM_010499.2 Homo sapiens splicing factor, arginine/serine-rich (transformer 2 Drosophila homolog) 10 (SFRS10), mRNA 2.8e-23
4PR-C12-cDNA-std-218 12731415 XM_011300.1 Homo sapiens similar to ribosomal protein S3A (H. sapiens) (LOC65465), mRNA 8.0e-73
4PR-C12-cDNA-std-223 36135 HSRPL41 H.sapiens mRNA for homologue to yeast ribosomal protein L41 1.5e-45
4PR-C12-cDNA-std-302 4506668 NM_001003.1 Homo sapiens ribosomal protein, large, P1 (RPLP1), mRNA 6.9e-106
4PR-C12-cDNA-std-303 307184 HUMMEK2NF Homosapiens ERK activator kinase (MEK2) mRNA 3.1e-114
4PR-C12-cDNA-std-305 11968181 NM_022551.1 Homo sapiens ribosomal protein S18 (RPS18), mRNA 1.5e-68
4PR-C12-cDNA-std-306 3449301 AB011538 Homo sapiens mRNA for MEGF5, partial cds 1.7e-101
4PR-C12-cDNA-std-307 4506694 NM_001022.1 Homo sapiens ribosomal protein S19 (RPS19), mRNA 2.5e-15
4PR-C12-cDNA-std-309 4506618 NM_000986.1 Homo sapiens ribosomal protein L24 (RPL24), mRNA 2.5e-114
4PR-C12-cDNA-std-311 4506678 NM_001014.1 Homo sapiens ribosomal protein S10 (RPS10), mRNA 2.8e-23
4PR-C12-cDNA-std-312 8980360 HSA276578 Homo sapiens partial SPINK5 gene for serine protease inhibitor, Kazal type 3, exon 16 0.0017
4PR-C12-cDNA-std-313 4506668 NM_001003.1 Homo sapiens ribosomal protein, large, P1 (RPLP1), mRNA 3.4e-71
4PR-C12-cDNA-std-314 7106817 AF151048 Homo sapiens HSPC214 mRNA, complete cds 1.5e-63
4PR-C12-cDNA-std-316 4506678 NM_001014.1 Homo sapiens ribosomal protein S10 (RPS10), mRNA 3.3e-34
4PR-C12-cDNA-std-317 12739283 XM_008062.2 Homo sapiens ribosomal protein S15a (RPS15A), mRNA 2.6e-63
4PR-C12-cDNA-std-318 4505184 NM_002415.1 Homo sapiens macrophage migration inhibitory factor (glycosylation-inhibiting factor) (MIF), mRNA 5.4e-53
4PR-C12-cDNA-std-319 7657521 NM_014245.1 Homo sapiens ring finger protein 7 (RNF7), mRNA 4.4e-30
4PR-C12-cDNA-std-320 4506678 NM_001014.1 Homo sapiens ribosomal protein S10 (RPS10), mRNA 6.6e-32
4PR-C12-cDNA-std-315 7662624 NM_014106.1 Homo sapiens PRO1914 protein (PRO1914), mRNA 1.9e-30

ESTs in 4th Week Posterior Rhombomere

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Clone ID GenBank Acc/GI UniGene Description Significance
Level
4EPR-9 AC008981AC008981 Homo sapiens chromosome 19 LLNLF-162A4, complete sequence --
4PR-C12-cDNA-std-57 3649591AI142134GDM00L05 human embryo cDNA library Homo sapiens cDNA 5' 6.6e-76
4PR-C12-cDNA-std-BC07 10439452 AK026570 Homo sapiens cDNA: FLJ22917 fis, clone KAT06430 7.7e-30
4PR-C12-cDNA-std-BC19 10281451 AC005020 Homo sapiens BAC clone GS1-259H13 from 7, complete sequence 7.9e-06
4PR-C12-cDNA-std-BC20 3337301 AC005321 Homo sapiens chromosome 19, cosmid R27377, complete sequence 1.1e-15
4PR-C12-cDNA-std-BC23 10435276 AK023370 Homo sapiens cDNA FLJ13308 fis, clone OVARC1001436, weakly similar to ENL PROTEIN 6.4e-14
4PR-C12-cDNA-std-BC25 8248733 HSBA504H3 Human DNA sequence from clone RP11-504H3 on chromosome 20 Contains the SNX5 gene (sorting nexin 5), a gene similar to PTMA (prothymosin-alpha), the 3' end of a gene encoding a Zinc-finger protein, two CpG islands, ESTs, STSs and GSSs, complete sequence 4.5e-22
4PR-C12-cDNA-std-BC33 5912116 HSM801093 Homo sapiens mRNA; cDNA DKFZp566J164 (from clone DKFZp566J164); complete cds 8.0e-50
4PR-C12-cDNA-std-BC49 5262480 HSM800572 Homo sapiens mRNA; cDNA DKFZp564M082 (from clone DKFZp564M082); complete cds 1.4e-62
4PR-C12-cDNA-std-BC51 10439530 AK026634 Homo sapiens cDNA: FLJ22981 fis, clone KAT11391, highly similar to HUMTI227HC Human mRNA for TI-227H 4.7e-50
4PR-C12-cDNA-std-BC52 10439379 AK026505 Homo sapiens cDNA: FLJ22852 fis, clone KAT00780 5.5e-82
4PR-C12-cDNA-std-BC68 3483595 HUMZD39H03 Homo sapiens full length insert cDNA clone ZD39H03 1.6e-50
4PR-C12-cDNA-std-BC69 10440255 AK027187 Homo sapiens cDNA: FLJ23534 fis, clone LNG06974, highly similar to HUMRPS6A Human ribosomal protein S6 mRNA 1.4e-63
4PR-C12-cDNA-std-BC72 8218581 CNS00007 Human chromosome 14 DNA sequence *** IN PROGRESS *** BAC R-950C14 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence 5.2e-83
4PR-C12-cDNA-std-BC75 5262727 HSM800763 Homo sapiens mRNA; cDNA DKFZp586L081 (from clone DKFZp586L081) 4.6e-56
4PR-C12-cDNA-std-BC76 4406548 AF131738 Homo sapiens clone 24976 mRNA sequence, partial cds 4.7e-56
4PR-C12-cDNA-std-BC81 6642739 AF113008 Homo sapiens clone FLB0708 mRNA sequence 1.8e-65
4PR-C12-cDNA-std-BC83 11496286 AC023158 Homo sapiens 12 BAC RP11-438D14 (Roswell Park Cancer Institute Human BAC Library) complete sequence 6.9e-24
4PR-C12-cDNA-std-BC86 9956013 AY007118.1 Homo sapiens clone CDABP0006 mRNA sequence 6.5e-57
4PR-C12-cDNA-std-127 5262540 HSM800621 Homo sapiens mRNA; cDNA DKFZp586K2322 (from clone DKFZp586K2322) 2.7e-31
4PR-C12-cDNA-std-131 5918013 HS423B22 Human DNA sequence from clone 423B22 on chromosome 1p33-35.3, complete sequence [Homo sapiens] 6.2e-30
4PR-C12-cDNA-std-213 7705952 NM_016360.1 Homo sapiens clone HQ0477 PRO0477p (LOC51204), mRNA 4.3e-23
4PR-C12-cDNA-std-321 8670869 IROEST123 Homo sapiens EST from clone 251760, 5' end 5.7e-23
4PR-C12-cDNA-std-323 2447218 AC002988 Human DNA from chromosome 19-specific cosmid R27726, genomic sequence, complete sequence [Homo sapiens] 8.3e-08
4PR-C12-cDNA-std-130 8162286 AW972440 EST384531 MAGE resequences, MAGL Homo sapiens cDNA 1.4e-05
4PR-C12-cDNA-std-134 5927897 AL036759 DKFZp564J1163_s1 564 (synonym: hfbr2) Homo sapiens cDNA clone DKFZp564J1163 3' 0.81
4PR-C12-cDNA-std-203 8170402 AW979116 EST391226 MAGE resequences, MAGP Homo sapiens cDNA 0.00049
4PR-C12-cDNA-std-204 8751144 BE207746 bb14c02.x1 NIH_MGC_21 Homo sapiens cDNA clone IMAGE:2962850 3' similar to gb:X69150 40S RIBOSOMAL PROTEIN S18 (HUMAN); gb:M76763 Mus musculus ribosomal protein (MOUSE); 8.2e-35
4PR-C12-cDNA-std-206 5407965 AL038838 DKFZp566P1146_s1 566 (synonym: hfkd2) Homo sapiens cDNA clone DKFZp566P1146 3' 3.3e-40
4PR-C12-cDNA-std-209 5405974 AL036418 DKFZp564A1462_r1 564 (synonym: hfbr2) Homo sapiens cDNA clone DKFZp564A1462 5' 6.4e-05
4PR-C12-cDNA-std-210 8162993 AW973132 EST385245 MAGE resequences, MAGM Homo sapiens cDNA 4.2e-07
4PR-C12-cDNA-std-215 10372669 BE858041 7g22c11.x1 NCI_CGAP_Brn23 Homo sapiens cDNA clone IMAGE:3307220 3' similar to TR:Q9Y5U2 Q9Y5U2 TUMOR SUPPRESSING STF CDNA 4. ; 1.4e-30
4PR-C12-cDNA-std-219 11969087 BF683679 602139929F1 NIH_MGC_46 Homo sapiens cDNA clone IMAGE:4301262 5' 9.1e-10
4PR-C12-cDNA-std-221 8162630 AW972784 EST384879 MAGE resequences, MAGL Homo sapiens cDNA 9.1e-09
4PR-C12-cDNA-std-224 5407941 AL038807 DKFZp566N0746_r1 566 (synonym: hfkd2) Homo sapiens cDNA clone DKFZp566N0746 5' 1.2e-07
4PR-C12-cDNA-std-301 8162526 AW972680 EST384771 MAGE resequences, MAGL Homo sapiens cDNA 0.0048
4PR-C12-cDNA-std-304 3649591 AI142134 GDM00L05 human embryo cDNA library Homo sapiens cDNA 5' 1.1e-59
4PR-C12-cDNA-std-310 5435454 AL079878 DKFZp586A2217_r1 586 (synonym: hute1) Homo sapiens cDNA clone DKFZp586A2217 5' 2.6e-42
4PR-C12-cDNA-std-324 12665780 BG153750 nag59d02.x1 NCI_CGAP_Co26 Homo sapiens cDNA clone IMAGE:4225946 3' similar to contains Alu repetitive element; 0.00026

Last updated April 10, 2001