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COGENE: cDNA Libraries
Clones from 4th Week, 1st Pharyngeal Arch

Genes in 4th Week 1st Pharyngeal Arch

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Clone ID GenBank Acc/GI UniGene Description Significance
Level
4PA1-C12-cDNA-std-4A10 X69150 HSRPS18 H.sapiens mRNA for ribosomal protein S18 1.8e-68
4PA1-C12-cDNA-std-4A12 D00510 HUMCPB Homo sapiens mRNA for calphobindin II, complete cds (also hits annexin-6) 5.5e-112
4PA1-C12-cDNA-std-4A3 5453897 PIN1 Homo sapiens protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1 (PIN1) mRNA 8.7e-74
4PA1-C12-cDNA-std-4A4 4506678 RPS10 Homo sapiens ribosomal protein S10 2.2e-34
4PA1-C12-cDNA-std-4B10 Y00661 HSBCR Human bcr mRNA (break point cluster gene) 3.0e-52
4PA1-C12-cDNA-std-4B12 NM_005000.1 NDUFA5 Homo sapiens NADH dehydrogenase 5.7e-46
4PA1-C12-cDNA-std-4B6 4506618 RPL24 Homo sapiens ribosomal protein L24 mRNA 3.6e-73
4PA1-C12-cDNA-std-4C2 L05094 HUMRIBPROE Homo sapiens ribosomal protein L27 mRNA 2.1e-75
4PA1-C12-cDNA-std-4C4 4506646 RPL39 Homo sapiens ribosomal protein L39 mRNA 3.9e-73
4PA1-C12-cDNA-std-4C6 4506694 RPS19 Homo sapiens ribosomal protein S19 1.5e-15
4PA1-C12-cDNA-std-4C7 4503480 EEF1G Homo sapiens eukaryotic translation elongation factor 1 gamma (EEF1G) mRNA 1.1e-92
4PA1-C12-cDNA-std-4C9 X69150 HSRPS18 H.sapiens mRNA for ribosomal protein S18 1.2e-63
4PA1-C12-cDNA-std-4D10 AF077043.1 AF077043 Homo sapiens 60S ribosomal protein mRNA 2.2e-40
4PA1-C12-cDNA-std-4D8 4506592 RPL10 Homo sapiens ribosomal protein L10 mRNA 8.1e-74
4PA1-C12-cDNA-std-4E10 5032084 SERF2 Homo sapiens small EDRK-rich factor 2 (SERF2) 1.7e-63
4PA1-C12-cDNA-std-4E11 M14630 HUMTHYMA Human prothymosin alpha mRNA, complete cds 6.7e-47
4PA1-C12-cDNA-std-4E2 4506694 RPS19 Homo sapiens ribosomal protein L39 mRNA 1.2e-14
4PA1-C12-cDNA-std-4E6 4506678 RPS10 Homo sapiens ribosomal protein S10 2.7e-44
4PA1-C12-cDNA-std-4F10 4506916 SGNE1Homo sapiens secretory granule, neuroendocrine protein 1 (7B2 protein) mRNA 1.0e-24
4PA1-C12-cDNA-std-4F3 X69150 HSRPS18Homo sapiens ribosomal protein S18 mRNA 1.2e-62
4PA1-C12-cDNA-std-4F4 4506622 RPL27 Homo sapiens ribosomal protein L27 mRNA 1.5e-39
4PA1-C12-cDNA-std-4F5 Z23090 HSHSP28 H.sapiens mRNA for 28 kDa heat shock protein 5.6e-77
4PA1-C12-cDNA-std-4F6 Z61623 HS55F2F H.sapiens CpG island DNA genomic Mse1 fragment 5.2e-29
4PA1-C12-cDNA-std-4G12 Z22572 HSCDEIBPA H.sapiens CDEI binding protein mRNA 6.9e-40
4PA1-C12-cDNA-std-4G4 L42856 HUMRPIT Homo sapiens RNA polymerase II transcription factor SIII p18 subunit mRNA, complete cds. 2.4e-71
4PA1-C12-cDNA-std-4G5 4506592 RPS10 Homo sapiens ribosomal protein L10 mRNA 2.3e-24
4PA1-C12-cDNA-std-4G6 4506652 RPL4 Homo sapiens ribosomal protein L4 mRNA 4.0e-66
4PA1-C12-cDNA-std-4G7 V00710 MIT1HS Human mitochondrial genes for several tRNAs (Phe, Val, Leu) 8.1e-40
4PA1-C12-cDNA-std-4G8 4502992 COX7C Homo sapiens cytochrome c oxidase subunit VIIc (COX7C), nuclear gene encoding mitochondrial protein, mRNA 1.9e-60
4PA1-C12-cDNA-std-4G9 V00710 MIT1HS Human mitochondrial genes for several tRNAs (Phe, Val, Leu) 1.3e-73
4PA1-C12-cDNA-std-4H1 4506692 RPS17 Homo sapiens ribosomal protein S17 mRNA 1.1e-25
4PA1-C12-cDNA-std-4H11 NM_005000.1 NDUFA5 Homo sapiens NADH dehydrogenase 4.2e-68
4PA1-C12-cDNA-std-4H12 S79979 S79979 Homo sapiens ribosomal protein L37 mRNA 1.6e-69
4PA1-C12-cDNA-std-4H3 L05094 RPL27 Homo sapiens ribosomal protein L27 mRNA 2.3e-47
4PA1-C12-cDNA-std-4H4 4506622 RPL27 Homo sapiens ribosomal protein L27 mRNA 1.6e-48
4PA1-C12-cDNA-std-4H5 4506618 RPL24 Homo sapiens ribosomal protein L24 mRNA 2.2e-75
4PA1-C12-cDNA-std-4H6 K00799 HUMFN2 Human fibronectin (fn) 3' coding region and flank, mRNA 7.1e-38
4PA1-C12-cDNA-std-4H7 Y00661 HSBCR Human bcr mRNA (break point cluster gene) 3.7e-39
4PA1-C12-cDNA-std-4H9 X02596 HSBCRR Human mRNA for bcr (breakpoint cluster gene) 1.1e-83
PA10 2815605 OIP3 Homo sapiens Opa-interacting protein OIP3 mRNA, partial cds 0.020
PA11 4505838 PKM2 Homo sapiens pyruvate kinase, muscle (PKM2) mRNA 2.1e-62
PA13 183402 HUMGNAS6 Human guanine nucleotide-binding protein alpha-subunit gene (G-s-alpha) 2.3e-17
PA14 4506716 RPS29 Homo sapiens ribosomal protein S29 (RPS29) mRNA 2.0e-24
PA15 4506678 RPS10 Homo sapiens ribosomal protein S10 (RPS10) mRNA 3.1e-35
PA4 598636 HEPG2 Human HepG2 partial cDNA, clone hmd2d02m5 7.1e-06
4PA1-C12-cDNA-std-4A2 8886721AF189011 Homo sapiens ribonuclease III (RN3) mRNA, complete cds 1.7e-85
4PA1-C12-cDNA-std-4B9 7243265AB037855 Homo sapiens mRNA for KIAA1434 protein, partial cds 3.0e-52
4PA1-C12-cDNA-std-4F12 4506678NM_001014.1 Homo sapiens ribosomal protein S10 (RPS10) mRNA 1.6e-33
4PA1-C12-cDNA-std-4F9 404860U00238 Homo sapiens glutamine PRPP amidotransferase (GPAT) mRNA, complete cds 1.4e-48
4PA1-C12-cDNA-std-4G3 9022443AF283772 Homo sapiens clone TCBA00781 mRNA sequence4.6e-12
4PA1-C12-cDNA-std-4H10 4506916NM_003020.1 Homo sapiens secretory granule, neuroendocrine protein 1 (7B2 protein) (SGNE1) mRNA 8.7e-28
4PA1-C12-cDNA-std-4H8 7243265AB037855 Homo sapiens mRNA for KIAA1434 protein, partial cds 5.1e-62
4PA1-C12-cDNA-std-02 4506724 NM_001007.1 Homo sapiens ribosomal protein S4, X-linked (RPS4X), mRNA 1.6e-121
4PA1-C12-cDNA-std-04 2738496 AF006484 Homo sapiens putative oral tumor suppressor protein (doc-1) mRNA, complete cds 2.1e-67
4PA1-C12-cDNA-std-123 BC001032.1 BC001032 Homo sapiens, ribosomal protein S10, clone MGC:1633, mRNA, complete cds 2e-95
4PA1-C12-cDNA-std-125 BC001032.1 BC001032 Homo sapiens, ribosomal protein S10, clone MGC:1633, mRNA, complete cds 2e-95
4PA1-C12-cDNA-std-131 5138994 AB026436 Homo sapiens mRNA for dual specificity phosphatase MKP-5, complete cds 4e-12
4PA1-C12-cDNA-std-134 NM_001861 NM_001861.1 Homo sapiens cytochrome c oxidase subunit IV (COX4), nuclear gene encoding mitochondrial protein, mRNA 1e-141

ESTs in 4th Week 1st Pharyngeal Arch

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Clone ID GenBank Acc/GI UniGene Description Significance
Level
4PA1-C12-cDNA-std-4E12 AB014523 AB014523Homo sapiens mRNA for KIAA0623 protein 3.6e-104
4PA1-C12-cDNA-std-4C10 AC003682 AC003682Homo sapiens chromosome 19 5.2e-31
4PA1-C12-cDNA-std-4G2 AC004026 AC004026Homo sapiens chromosome 19, cosm... 3.6e-07
4PA1-C12-cDNA-std-4E3 AC004134 AC004134Homo sapiens chromosome 17, clone... 9.2e-35
4PA1-C12-cDNA-std-4E8 AF070659 AF070659Homo sapiens HSPC003 mRNA, complete cds 2.0e-59
4PA1-C12-cDNA-std-4F8 AF131753 AF131753Homo sapiens clone 24859 mRNA sequence 1.1e-09
4PA1-C12-cDNA-std-4B2 Z74021 HSB1E7Human DNA sequence from cosmid B1E7 on ... 8.5e-16
4PA1-C12-cDNA-std-4B5 AL050201.1 HSM800498Homo sapiens mRNA; cDNA DKFZp586... 5.6e-78
4PA1-C12-cDNA-std-4D5 AL050201.1 HSM800498Homo sapiens mRNA; cDNA DKFZp586... 4.0e-77
4PA1-C12-cDNA-std-4C5 5407965AL038838 DKFZp566P1146_s1 566 (synonym: hfkd2) Homo sapiens cDNA clone DKFZp566P1146 3' 1.4e-66
4PA1-C12-cDNA-std-4E5 6925512AW406455 UI-HF-BL0-acr-d-01-0-UI.r1 NIH_MGC_37 Homo sapiens cDNA clone IMAGE:3060120 5' 1.1e-79
4PA1-C12-cDNA-std-4G1 5406751AL037343 DKFZp564F2071_s1 564 (synonym: hfbr2) Homo sapiens cDNA clone DKFZp564F2071 3' 1.5e-44
4PA1-C12-cDNA-std-4H2 6496932AI906545 CM-BT115-080499-006 BT115 Homo sapiens cDNA 5.9e-12
4PA1-C12-cDNA-std-01 1508753 HSPA9E1 H.sapiens flow-sorted chromosome 6 TaqI fragment, SC6pA9E1 2.9e-28
4PA1-C12-cDNA-std-05 7959715 AF116606 Homo sapiens PRO0890 mRNA, complete cds 1.3e-60
4PA1-C12-cDNA-std-126 10437057 AK024706 Homo sapiens cDNA: FLJ21053 fis, clone CAS00524, highly similar to AF132941 Homo sapiens CGI-07 protein mRNA 1e-171
4PA1-C12-cDNA-std-132 AC004022.1 AC004022 Homo sapiens BAC clone GS1-155M11 from 7q21-q22, complete sequence 6e-86

Unknown Genes in 4th Week 1st Pharyngeal Arch

Clone ID Acc/GI Read
Direction
4PA1-C12-cDNA-std-4G10 No significant hits R
4PA1-C12-cDNA-std-4G11 No significant hits R
4PA1-C12-cDNA-std-129 No significant hits
Last updated February 21, 2001