COGENE, the Craniofacial and Oral Gene Expression Network
Serial Analysis of Gene Expression (SAGE)

Table of Contents COGENE Home cDNA Libraries SAGE Data Next set of SAGE tags Previous set of SAGE tags Beginning SAGE tag list End SAGE tag list Bottom of page

SAGE Library Tags: 4 Week Anterior Rhombomere

Count Tag_SequenceUniGene_Hs.GeneDescription
3 GTGGTACAGG 23131 KIFC3 kinesin family member C3
3 GTGGTACAGG 31731 PRDX5 peroxiredoxin 5
3 GTGTGGGGGG 2340 JUP junction plakoglobin
3 GTGTGGGGGG 117484 - ESTs
3 GTTGTGGTTA 48516 B2M beta-2-microglobulin
3 GTTGTGGTTA 99785 - Homo sapiens cDNA: FLJ21245 fis, clone COL01184.
3 GTTTGGCAGT 283690 H41 hypothetical protein H41
3 GTTTGGGTTG 250655 PTMA prothymosin, alpha (gene sequence 28)
3 GTTTTTGCTT 7718 FLJ22678 hypothetical protein FLJ22678
3 GTTTTTGCTT 79110 NCL nucleolin
3 TAACCAATCA 479 RAB5C RAB5C, member RAS oncogene family
3 TAACCAATCA 142307 DKFZP434I0714 hypothetical protein DKFZP434I0714
3 TAACTGTGTG 9774 SS18L2 synovial sarcoma translocation gene on chromosome 18-like 2
3 TAACTGTGTG 82226 GPNMB glycoprotein (transmembrane) nmb
3 TAAGTGGAAT 24809 FLJ10826 hypothetical protein FLJ10826
3 TAAGTGGAAT 75103 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
3 TAATCCTCAA 78409 COL18A1 collagen, type XVIII, alpha 1
3 TAATCCTCAA 234489 LDHB lactate dehydrogenase B
3 TACAAAAGTG 194662 CNN3 calponin 3, acidic
3 TACACGTGAG 11156 LOC51255 hypothetical protein LOC51255
3 TACAGTATGT 170171 GLUL glutamate-ammonia ligase (glutamine synthase)
3 TAGACTAGCA 100090 TSPAN-3 tetraspan 3
3 TAGCTCCCTA 91846 DKFZp761C121 hypothetical protein DKFZp761C121
3 TAGCTCTATG 76549 ATP1A1 ATPase, Na+/K+ transporting, alpha 1 polypeptide
3 TAGGGATATC 236204 NUP107 nuclear pore complex protein
3 TAGTCCCTCT 8102 RPS20 ribosomal protein S20
3 TAGTCCCTCT 84264 ANP32B acidic (leucine-rich) nuclear phosphoprotein 32 family, member B
3 TATATATTTG 816 SOX2 SRY (sex determining region Y)-box 2
3 TATATATTTG 96125 RCP Rab coupling protein
3 TATGTGATTT 5216 BZW2 basic leucine zipper and W2 domains 2
3 TATGTTTCAG 62 PTPN12 protein tyrosine phosphatase, non-receptor type 12
3 TATTGAAAGT 97896 - ESTs
3 TCAATAAAGG 118797 UBE2D3 ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)
3 TCAATAAAGG 184628 C20orf36 chromosome 20 open reading frame 36
3 TCAATCAAGA 349530 YWHAH tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide
3 TCACCTTAGG 171405 - EST
3 TCACCTTAGG 239625 ITM2B integral membrane protein 2B
3 TCAGAAGGTG 324521 DC50 hypothetical protein DC50
3 TCAGAGTAAT 23348 SKP2 S-phase kinase-associated protein 2 (p45)
3 TCCCTACATC - - --
3 TCCGTGGTTG 79516 BASP1 brain abundant, membrane attached signal protein 1
3 TCCTAGTTCA 44 PTN pleiotrophin (heparin binding growth factor 8, neurite growth-promoting factor 1)
3 TCCTCATCCT 78110 FLJ10998 hypothetical protein FLJ10998
3 TCCTCATCCT 406269 STMN1 stathmin 1/oncoprotein 18
3 TCCTCCCTCC 432607 PSMB2 proteasome (prosome, macropain) subunit, beta type, 2
3 TCTAAAGGTC 286 RPL4 ribosomal protein L4
3 TCTAGTCACT 288087 - ESTs
3 TCTATAGAGT 7351 ARPP-19 cyclic AMP phosphoprotein, 19 kD
3 TCTATAGAGT 93523 PPIL2 peptidylprolyl isomerase (cyclophilin)-like 2
3 TCTCTACCCA 279518 APLP2 amyloid beta (A4) precursor-like protein 2
3 TCTGACCACC 285911 MDGA1 MAM domain containing glycosylphosphatidylinositol anchor 1
3 TCTGACCACC 355719 NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin)
3 TCTGCAAAGG 80684 HMGB2 high-mobility group box 2
3 TCTGTGACTT 24808 - ESTs, Weakly similar to hypothetical protein FLJ20378 [Homo sapiens] [H.sapiens]
3 TCTGTGACTT 236494 RAB10 RAB10, member RAS oncogene family
3 TGAAAATCAA 239489 TIA1 TIA1 cytotoxic granule-associated RNA binding protein
3 TGAAAGTAAC 256583 ILF3 interleukin enhancer binding factor 3, 90kDa
3 TGAATGGCCT 20597 KLHDC2 kelch domain containing 2
3 TGACTGTTAT 81848 RAD21 RAD21 homolog (S. pombe)
3 TGAGTGGTCA 121849 MAP1LC3B microtubule-associated protein 1 light chain 3 beta
3 TGCAATATGG 750 FBN1 fibrillin 1 (Marfan syndrome)
3 TGCAATATGG 173912 EIF4A2 eukaryotic translation initiation factor 4A, isoform 2
3 TGCAATATGG 235975 PPP1R12C protein phosphatase 1, regulatory (inhibitor) subunit 12C
3 TGCCTGCCCT 120170 FLJ21415 hypothetical protein FLJ21415
3 TGCCTGCCCT 426977 RPL19 ribosomal protein L19
3 TGCTGGTGTG 298573 KIAA1720 KIAA1720 protein
3 TGCTGGTGTG 433523 KIAA0864 KIAA0864 protein
3 TGCTGTGCAT 380774 DDX3 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3
3 TGGAATGCTG 7744 NDUFV1 NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa
3 TGGAATGCTG 290438 - EST
3 TGGATCCTAG 429506 NDUFS3 NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa (NADH-coenzyme Q reductase)
3 TGGATGTACA 43773 MGC23918 hypothetical protein MGC23918
3 TGGCAACCTT 75117 ILF2 interleukin enhancer binding factor 2, 45kDa
3 TGGCAACCTT 279952 LOC51064 glutathione S-transferase subunit 13 homolog
3 TGGCCCCACC 134870 - ESTs
3 TGGCCCCACC 198281 PKM2 pyruvate kinase, muscle
3 TGGCCTAATA 1501 SDC2 syndecan 2 (heparan sulfate proteoglycan 1, cell surface-associated, fibroglycan)
3 TGGCCTGCCC 181002 MSF MLL septin-like fusion
3 TGGCTTCAAG 76064 RPL27A ribosomal protein L27a
3 TGGTAGTTAC 66881 DNCI2 dynein, cytoplasmic, intermediate polypeptide 2
3 TGGTAGTTAC 355812 - ESTs, Highly similar to DYI2_HUMAN Dynein intermediate chain 2, cytosolic (DH IC-2) (Cytoplasmic dynein intermediate chain 2) [H.sapiens]
3 TGGTGACAGT 301005 H2AV histone H2A.F/Z variant
3 TGGTGTATGC - - --
3 TGGTTCTATA 26213 C20orf167 chromosome 20 open reading frame 167
3 TGTAACTTCC 20107 KNS2 kinesin 2 60/70kDa
3 TGTAACTTCC 171683 NR1H4 nuclear receptor subfamily 1, group H, member 4
3 TGTATAAAAA 82689 TRA1 tumor rejection antigen (gp96) 1
3 TGTATAAAAA 91579 MGC19606 similar to HYPOTHETICAL 34.0 KDA PROTEIN ZK795.3 IN CHROMOSOME IV
3 TGTCACCCCT 24739 LOC201194 hypothetical protein LOC201194
3 TGTGAGCCCT 4997 RNPC4 RNA-binding region (RNP1, RRM) containing 4
3 TGTGAGCCCT 102948 ENIGMA enigma (LIM domain protein)
3 TGTGCTAATA 60257 - Homo sapiens cDNA FLJ13598 fis, clone PLACE1009921.
3 TGTGCTAATA 183037 PRKAR1A protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1)
3 TGTGTCAAAG 181163 HMGN2 high-mobility group nucleosomal binding domain 2
3 TGTGTCAAAG 234726 SERPINA3 serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3
3 TGTTCATTCC 107164 SPTBN1 spectrin, beta, non-erythrocytic 1
3 TGTTCATTCC 169378 MPDZ multiple PDZ domain protein
3 TTAAAAGCCT 348669 CKS1B CDC28 protein kinase regulatory subunit 1B
3 TTAATAAACA 24129 FLJ10716 CLLL7 protein
3 TTAATAAACA 153687 INPP4B inositol polyphosphate-4-phosphatase, type II, 105kDa
3 TTACGATGAA 6335 PIP5K2B phosphatidylinositol-4-phosphate 5-kinase, type II, beta
3 TTACTTCCCC 184641 FADS2 fatty acid desaturase 2
3 TTAGATCGTT 121068 TM4SF6 transmembrane 4 superfamily member 6
3 TTAGCAATAA 74346 MGC14353 hypothetical protein MGC14353
3 TTAGCAATAA 75798 C20orf111 chromosome 20 open reading frame 111
3 TTATGTTTAA 69855 D1S155E NRAS-related gene
3 TTATGTTTAA 79914 LUM lumican
3 TTATTTAAGG 180789 S164 S164 protein
3 TTATTTAAGG 288932 MAK3P likely ortholog of mouse Mak3p homolog (S. cerevisiae)
3 TTCACAAAGG 76913 PSMA5 proteasome (prosome, macropain) subunit, alpha type, 5
3 TTCATATAGT 263671 RDX radixin
3 TTCATATAGT 443048 - ESTs
3 TTCCTCAGGA - - --
3 TTCTATTTTG 112058 SIVA CD27-binding (Siva) protein
3 TTCTCTACAA 15087 C1orf16 chromosome 1 open reading frame 16
3 TTCTCTACAA 20157 CDK5RAP3 CDK5 regulatory subunit associated protein 3
3 TTGCCTGTAT 184693 TCEB1 transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)
3 TTGCCTGTAT 355937 - ESTs, Highly similar to 2119399B elongin C [Homo sapiens] [H.sapiens]
3 TTGCCTTTTT 4311 UBA2 SUMO-1 activating enzyme subunit 2
3 TTGCCTTTTT 118738 KIAA0800 KIAA0800 gene product
3 TTGCCTTTTT 278679 ADAM19 a disintegrin and metalloproteinase domain 19 (meltrin beta)
3 TTGGACTGAG 6518 GABARAPL2 GABA(A) receptor-associated protein-like 2
3 TTGGACTGAG 74626 AP2B1 adaptor-related protein complex 2, beta 1 subunit
3 TTGGCAGAGA 79375 HLCS holocarboxylase synthetase (biotin-[proprionyl-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)
3 TTGGCAGAGA 288694 LOC286260 hypothetical protein LOC286260
3 TTGTCCTCTG 264190 VPS35 vacuolar protein sorting 35 (yeast)
3 TTTAATTGTG 145279 SET SET translocation (myeloid leukemia-associated)
3 TTTAATTGTG 343911 PIG8 etoposide-induced mRNA
3 TTTACTGCTA 86154 LIN-28 RNA-binding protein LIN-28
3 TTTATCTGCT 6727 HMGB1 high-mobility group box 1
3 TTTATTTGGC 152931 LBR lamin B receptor
3 TTTATTTGGC 304330 - ESTs
3 TTTCAAGTGG 17820 ROCK1 Rho-associated, coiled-coil containing protein kinase 1
3 TTTCAAGTGG 155546 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2
3 TTTCATCTGT 76768 P4HA1 procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide I
3 TTTCATCTGT 285013 ANP32A acidic (leucine-rich) nuclear phosphoprotein 32 family, member A
3 TTTCCTTCAC 43141 DKFZP727C091 DKFZP727C091 protein
3 TTTCCTTCAC 279905 ANKT nucleolar protein ANKT
3 TTTCCTTTGC 13467 STARD3NL STARD3 N-terminal like
3 TTTCCTTTGC 112499 BZRAP1 benzodiazapine receptor (peripheral) associated protein 1
3 TTTCTGTGAA 14415 CSL4 exosomal core protein CSL4
3 TTTCTGTGAA 130815 FLJ21870 hypothetical protein FLJ21870
3 TTTGCTCTCC 278027 LIMK2 LIM domain kinase 2
3 TTTGTATAGA 426451 MN7 D15F37 (pseudogene)
3 TTTTATGGGT 79101 CCNG1 cyclin G1
3 TTTTGGGGGC 46736 - Homo sapiens, clone IMAGE:4177569, mRNA
3 TTTTTGTACA 78040 KDELR1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1
3 TTTTTGTACA 193406 LOC284465 hypothetical protein LOC284465
2 AAAAGAAACT 172182 PABPC1 poly(A) binding protein, cytoplasmic 1
2 AAAAGAAACT 356746 - ESTs, Highly similar to PAB1_HUMAN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1) (PABP1) [H.sapiens]
2 AAAATAAAGA 73722 APEX1 APEX nuclease (multifunctional DNA repair enzyme) 1
2 AAAATAAAGA 148635 - ESTs, Weakly similar to KIAA0377 gene product [Homo sapiens] [H.sapiens]
2 AAACAAGAAA 155001 UNC13 unc-13-like (C. elegans)
2 AAACAAGAAA 438400 - EST
2 AAACACCAAA 146388 MAP7 microtubule-associated protein 7
2 AAACACCAAA 256034 - ESTs
2 AAACACTCTT 151134 OXA1L oxidase (cytochrome c) assembly 1-like
2 AAACCAGCAT 158549 - ESTs
2 AAACCTCTTC 194698 CCNB2 cyclin B2
2 AAACTATGGC 27910 CEP2 centrosomal protein 2
2 AAACTATGGC 234773 EVI1 ecotropic viral integration site 1
2 AAACTCTATA 410294 ERMAP erythroblast membrane-associated protein
2 AAAGATTTTG 351875 COX6C cytochrome c oxidase subunit VIc
2 AAAGCAGCAC 9167 SH3BGRL2 SH3 domain binding glutamic acid-rich protein like 2
2 AAAGCAGCAC 108802 NSF N-ethylmaleimide-sensitive factor
2 AAAGCCAGCT 30503 FLJ34231 hypothetical protein FLJ34231
2 AAAGGAATAA 172089 PORIMIN pro-oncosis receptor inducing membrane injury gene
2 AAAGGAATAA 282397 - ESTs
2 AAATAGATCC - - --
2 AAATAGGTTT 10958 PARK7 Parkinson disease (autosomal recessive, early onset) 7
2 AAATCGATGA 13580 MGC29729 hypothetical protein MGC29729
2 AAATCTCTGG 109315 PRex1 KIAA1415 protein
2 AAATCTCTGG 351414 - Homo sapiens cDNA FLJ31209 fis, clone KIDNE2003377.
2 AAATTACATA 73291 WDR12 WD repeat domain 12
2 AACCACTGCT 76884 ID3 inhibitor of DNA binding 3, dominant negative helix-loop-helix protein
2 AACCCGGGAG 173936 IL10RB interleukin 10 receptor, beta
2 AACCCGGGAG 183255 KCNH6 potassium voltage-gated channel, subfamily H (eag-related), member 6
2 AACCCGGGAG 201667 AKR1D1 aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase)
2 AACCCTTGGG 173878 NIPSNAP1 nipsnap homolog 1 (C. elegans)
2 AACGAGGAAT - - --
2 AACTACATAG 5306 AXOT axotrophin
2 AACTACATAG 9527 APR-3 apoptosis related protein APR-3
2 AACTACATAG 23672 LRP6 low density lipoprotein receptor-related protein 6
2 AACTACCCCA 73962 EPHA7 EphA7
2 AACTACCCCA 301350 FXYD3 FXYD domain containing ion transport regulator 3
2 AACTGCGGCA 63908 CIP29 cytokine induced protein 29 kDa
2 AAGAAACCTT 5836 MRPS23 mitochondrial ribosomal protein S23
2 AAGAAACCTT 119651 GPC3 glypican 3
2 AAGAAAGTTC 10729 HSPC117 hypothetical protein HSPC117
2 AAGAAAGTTC 169577 FLJ14743 hypothetical protein FLJ14743
2 AAGAAAGTTC 272801 FLJ20464 hypothetical protein FLJ20464
2 AAGAAATGCA 8984 MGC16028 MGC16028 similar to RIKEN cDNA 1700019E19 gene
2 AAGAAATGCA 289015 MGC4171 hypothetical protein MGC4171
2 AAGAAGACTT 7719 GABARAP GABA(A) receptor-associated protein
2 AAGAAGTACT 119598 RPL3 ribosomal protein L3
2 AAGAATCTGA 183435 NDUFB1 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1, 7kDa
2 AAGAATCTGA 184352 PCNT1 pericentrin 1
2 AAGACAGGGC - - --
2 AAGAGTTACG 55041 MRPL2 mitochondrial ribosomal protein L2
2 AAGAGTTGGG 78713 SLC25A3 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3
2 AAGCAAGAAT 24684 KIAA1376 KIAA1376 protein
2 AAGCAAGAAT 97437 CEP1 centrosomal protein 1
2 AAGCCATTCA 12109 CIAO1 WD40 protein Ciao1
2 AAGCCATTCA 42346 - Homo sapiens clone alpha1 mRNA sequence
2 AAGCTTTGAG 356428 - Homo sapiens mRNA expressed only in placental villi, clone SMAP83.
2 AAGCTTTGAG 422118 EEF1A1 eukaryotic translation elongation factor 1 alpha 1
2 AAGGCAAAGC 93748 MGC23908 similar to RNA polymerase B transcription factor 3
2 AAGGCAAAGC 181368 PRPF8 PRP8 pre-mRNA processing factor 8 homolog (yeast)
2 AAGGCCGAGT 31387 DKFZP564J0123 DKFZP564J0123 protein
2 AAGGCCGAGT 40323 BUB3 BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast)
2 AAGGGGAGGA 78185 TCFL4 transcription factor-like 4
2 AAGGGGAGGA 376844 HNRPA1 heterogeneous nuclear ribonucleoprotein A1
2 AAGGTAATAT 81874 MGST2 microsomal glutathione S-transferase 2
2 AAGTACTTCA 64691 KIAA0483 KIAA0483 protein
2 AAGTACTTCA 375029 GPR73L1 G protein-coupled receptor 73-like 1
2 AAGTCATTCA 9629 PRCC papillary renal cell carcinoma (translocation-associated)
2 AAGTCATTCA 274416 NDUFA6 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa
2 AAGTGGATAG - - --
2 AAGTTCCAGA 193602 HCAP-G chromosome condensation protein G
2 AATAAGTACA 164107 - ESTs
2 AATAAGTACA 180919 ID2 inhibitor of DNA binding 2, dominant negative helix-loop-helix protein
2 AATACTTTTG 165998 PAI-RBP1 PAI-1 mRNA-binding protein
2 AATATGGATG 427152 PRO2900 hypothetical protein PRO2900
2 AATATGGGTG 4835 EIF3S8 eukaryotic translation initiation factor 3, subunit 8, 110kDa
2 AATATGGGTG 5542 DNAJC7 DnaJ (Hsp40) homolog, subfamily C, member 7
2 AATATTTCAA 75393 ACP1 acid phosphatase 1, soluble
2 AATATTTCAA 302649 NAP1L1 nucleosome assembly protein 1-like 1
2 AATCTTGTCT 356442 PRO1073 PRO1073 protein
2 AATGCTTTTA 154654 CYP1B1 cytochrome P450, family 1, subfamily B, polypeptide 1
2 AATGCTTTTA 433394 TUBA3 tubulin, alpha 3
2 AATGGATTAT 247452 BAT5 HLA-B associated transcript 5
2 AATGGATTAT 306418 - Homo sapiens cDNA FLJ10958 fis, clone PLACE1000444.
2 AATTACCAAA 351573 LOC123803 hypothetical protein LOC123803
2 AATTCAGTGA 266940 TCTEL1 t-complex-associated-testis-expressed 1-like 1
2 AATTCATAGG - - --
2 AATTCATTGG 75260 MIG2 mitogen inducible 2
2 AATTCATTGG 142442 HP1-BP74 HP1-BP74
2 AATTCCCGTC 18349 MRPL15 mitochondrial ribosomal protein L15
2 AATTCTCTCA 74564 SSR2 signal sequence receptor, beta (translocon-associated protein beta)
2 AATTGTTACT 241558 ARIH2 ariadne homolog 2 (Drosophila)
2 AATTGTTACT 256066 - ESTs
2 AATTTAACTT 71618 PCNP PEST-containing nuclear protein
2 AATTTGCAAC 75258 H2AFY H2A histone family, member Y
2 ACAAAGCATT 380833 IGFBP5 insulin-like growth factor binding protein 5
2 ACAAAGCATT 415414 - ESTs
2 ACAAGAATTG 80919 SYPL synaptophysin-like protein
2 ACACAAGTCG 356184 - ESTs, Highly similar to eukaryotic translation elongation factor 1 beta 2; eukaryotic translation elongation factor 1 beta 1 [Homo sapiens] [H.sapiens]
2 ACACAAGTCG 421608 EEF1B2 eukaryotic translation elongation factor 1 beta 2
2 ACACTGTCAC 7773 CKLFSF3 chemokine-like factor super family 3
2 ACACTGTCAC 301930 GPR114 G protein-coupled receptor 114
Top of page Table of Contents COGENE Home cDNA Libraries SAGE Data Next set of SAGE tags Previous set of SAGE tags Beginning SAGE tag list End SAGE tag list

Last updated Mon May 19 12:12:06 CDT 2003 ;