COGENE, the Craniofacial and Oral Gene Expression Network
Serial Analysis of Gene Expression (SAGE)

Table of Contents COGENE Home cDNA Libraries SAGE Data Next set of SAGE tags Beginning SAGE tag list End SAGE tag list Bottom of page

SAGE Library Tags: 4 Week Anterior Rhombomere

Count Tag_SequenceUniGene_Hs.GeneDescription
177 TTGGTCCTCT 356795 RPL41 ribosomal protein L41
177 TTGGTCCTCT 427046 - Homo sapiens E1BP1 pseudogene, mRNA sequence
74 AGGCTACGGA 389335 RPL13A ribosomal protein L13a
74 AGGCTACGGA 416613 FLJ34236 hypothetical protein FLJ34236
68 GGGACTGGGC 117848 HBE1 hemoglobin, epsilon 1
68 GGGACTGGGC 122256 LOC151174 hypothetical protein LOC151174
65 ATGCAGAGCT 283108 HBG1 hemoglobin, gamma A
65 ATGCAGAGCT 386655 HBG2 hemoglobin, gamma G
64 AGAGGTGTAG - - --
56 CCAGAACAGA 334807 RPL30 ribosomal protein L30
56 TGTGTTGAGA 356428 - Homo sapiens mRNA expressed only in placental villi, clone SMAP83.
56 TGTGTTGAGA 422118 EEF1A1 eukaryotic translation elongation factor 1 alpha 1
55 AAGGTGGAGG 76171 CEBPA CCAAT/enhancer binding protein (C/EBP), alpha
55 AAGGTGGAGG 337766 RPL18A ribosomal protein L18a
55 CACAAACGGT 195453 RPS27 ribosomal protein S27 (metallopanstimulin 1)
55 CACAAACGGT 337307 - ESTs, Highly similar to hypothetical protein FLJ22662 [Homo sapiens] [H.sapiens]
53 TCAGATCTTT 85112 IGF1 insulin-like growth factor 1 (somatomedin C)
53 TCAGATCTTT 389933 RPS4X ribosomal protein S4, X-linked
53 TTACCATATC 300141 RPL39 ribosomal protein L39
49 AGCTCTCCCT 82202 RPL17 ribosomal protein L17
49 CCCGTCCGGA 431392 RPL13 ribosomal protein L13
49 CTGGGTTAAT 97457 - ESTs
49 CTGGGTTAAT 298262 RPS19 ribosomal protein S19
48 GGACCACTGA 119598 RPL3 ribosomal protein L3
48 GGACCACTGA 300622 PLXNA2 plexin A2
48 GTGACCACGG 436980 - ESTs, Highly similar to NME3_HUMAN Glutamate [NMDA] receptor subunit epsilon 3 precursor (N-methyl D-aspartate receptor subtype 2C) (NR2C) (NMDAR2C) [H.sapiens]
47 AAGGAGATGG 164170 VRP vascular Rab-GAP/TBC-containing
47 AAGGAGATGG 184014 RPL31 ribosomal protein L31
47 ATTCTCCAGT 234518 RPL23 ribosomal protein L23
47 TAGGTTGTCT 401448 TPT1 tumor protein, translationally-controlled 1
45 AAGACAGTGG 3352 HDAC2 histone deacetylase 2
45 AAGACAGTGG 296290 RPL37A ribosomal protein L37a
45 ATAATTCTTT 539 RPS29 ribosomal protein S29
45 ATAATTCTTT 356463 FNTA farnesyltransferase, CAAX box, alpha
44 CGCTGGTTCC 289019 LTBP3 latent transforming growth factor beta binding protein 3
44 CGCTGGTTCC 388664 RPL11 ribosomal protein L11
44 TGCACGTTTT 169793 RPL32 ribosomal protein L32
43 TGGTGTTGAG 275865 RPS18 ribosomal protein S18
43 TGGTGTTGAG 422118 EEF1A1 eukaryotic translation elongation factor 1 alpha 1
42 CGCGTCACTA - - --
41 GGATTTGGCC 297753 RPLP2 ribosomal protein, large P2
40 GCCTGTATGA 180450 RPS24 ribosomal protein S24
39 GTGAAGGCAG 77039 RPS3A ribosomal protein S3A
39 GTGAAGGCAG 356570 - ESTs, Moderately similar to RS3A_HUMAN 40S ribosomal protein S3A [H.sapiens]
36 CCTAGCTGGA 401787 PPIA peptidylprolyl isomerase A (cyclophilin A)
36 TGGCGTACGG - - --
35 GAGGGAGTTT 76064 RPL27A ribosomal protein L27a
35 GAGGGAGTTT 356342 - ESTs, Highly similar to S55914 ribosomal protein L27a - human [H.sapiens]
35 GCATAATAGG 356482 - ESTs, Highly similar to 2113200B ribosomal protein L21 [Homo sapiens] [H.sapiens]
35 GCATAATAGG 431927 RPL21 ribosomal protein L21
35 TACCATCAAT 79877 MTMR6 myotubularin related protein 6
35 TACCATCAAT 169476 GAPD glyceraldehyde-3-phosphate dehydrogenase
34 AATAGGTCCA 409158 RPS25 ribosomal protein S25
34 ATGGCTGGTA 356360 RPS2 ribosomal protein S2
34 ATGGCTGGTA 356364 - ESTs, Moderately similar to ribosomal protein S2; 40S ribosomal protein S2 [Homo sapiens] [H.sapiens]
34 ATGGCTGGTA 356366 - ESTs, Highly similar to ribosomal protein S2; 40S ribosomal protein S2 [Homo sapiens] [H.sapiens]
34 TTGGAACAAT 80305 MGC14258 hypothetical protein MGC14258
32 CGCCGCCGGC 182825 RPL35 ribosomal protein L35
32 CTGCTATACG 180946 RPL5 ribosomal protein L5
32 CTGTTGGTGA 3463 RPS23 ribosomal protein S23
31 GGCAAGCCCC 187577 SOX21 SRY (sex determining region Y)-box 21
31 GGCAAGCCCC 425293 RPL10A ribosomal protein L10a
30 AGCACCTCCA 75309 EEF2 eukaryotic translation elongation factor 2
29 GCAACAACAC - - --
29 TGGGCAAAGC 256184 EEF1G eukaryotic translation elongation factor 1 gamma
28 GGGCTGGGGT 90436 SPAG7 sperm associated antigen 7
28 GGGCTGGGGT 430207 RPL29 ribosomal protein L29
27 GCCACCGTCC - - --
27 TGTACCTGTA 249922 - EST
27 TGTACCTGTA 334842 K-ALPHA-1 tubulin, alpha, ubiquitous
26 ATCAAGGGTG 426460 RPL9 ribosomal protein L9
26 ATTCAGAGCT 283108 HBG1 hemoglobin, gamma A
26 ATTCAGAGCT 356439 FLJ10079 hypothetical protein FLJ10079
26 GAAGTCGGAA - - --
26 GTAATCCTGC - - --
26 TGTGCTAAAT 11387 KIAA1453 KIAA1453 protein
26 TGTGCTAAAT 250895 RPL34 ribosomal protein L34
26 TTGGTGAAGG 75968 TMSB4X thymosin, beta 4, X chromosome
26 TTGGTGAAGG 426138 - Human promyelocytic leukemia cell mRNA, clones pHH58 and pHH81.
25 CACCTAATTG - - --
25 GGTCAGTCGG - - --
25 GTGCTGAATG 77385 MYL6 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
25 GTGCTGAATG 120260 IRTA1 immunoglobulin superfamily receptor translocation associated 1
25 GTTCGTGCCA 195464 FLNA filamin A, alpha (actin binding protein 280)
24 CCCATCGTCC - - --
24 GAAAAATGGT 181357 LAMR1 laminin receptor 1 (ribosomal protein SA, 67kDa)
24 GAAAAATGGT 356267 - ESTs, Moderately similar to RSP4_HUMAN 40S ribosomal protein SA (P40) (34/67 kDa laminin receptor) (Colon carcinoma laminin-binding protein) (NEM/1CHD4) [H.sapiens]
23 ACATCATCGA 356318 - ESTs, Highly similar to S35531 ribosomal protein L12, cytosolic - human [H.sapiens]
23 ACATCATCGA 405042 RPL12 ribosomal protein L12
23 GCCGAGGAAG 434029 C1S complement component 1, s subcomponent
22 AATCCTGTGG 43910 CD164 CD164 antigen, sialomucin
22 AATCCTGTGG 178551 RPL8 ribosomal protein L8
22 CTGTTGATTG 376844 HNRPA1 heterogeneous nuclear ribonucleoprotein A1
22 CTGTTGATTG 446380 LOC144983 hypothetical protein LOC144983
22 GTGTTAACCA 74267 RPL15 ribosomal protein L15
21 TTAAACCTCA 347810 - ESTs
21 TTAAACCTCA 372673 HNRPDL heterogeneous nuclear ribonucleoprotein D-like
20 GTGAAACCCC 268049 HSPC031 hypothetical protein HSPC031
20 GTGAAACCCC 323949 KAI1 kangai 1 (suppression of tumorigenicity 6, prostate; CD82 antigen (R2 leukocyte antigen, antigen detected by monoclonal and antibody IA4))
20 GTGTTGCACA 128638 - ESTs
20 GTGTTGCACA 165590 RPS13 ribosomal protein S13
19 CCAGAGGCTG - - --
19 CCCAACGCGC 347939 HBA2 hemoglobin, alpha 2
19 CCGACGGGCG - - --
19 CCTGTAATCC 181874 IFIT4 interferon-induced protein with tetratricopeptide repeats 4
19 CCTGTAATCC 292154 LOC55974 stromal cell protein
19 CTCAACATCT 348311 RPLP0P2 ribosomal protein, large, P0 pseudogene 2
19 CTCAACATCT 406511 RPLP0 ribosomal protein, large, P0
19 GCCGTGTCCG 356666 - ESTs, Highly similar to RS6_HUMAN 40S ribosomal protein S6 (Phosphoprotein NP33) [H.sapiens]
19 GCCGTGTCCG 380843 RPS6 ribosomal protein S6
19 TTCAATAAAA 2012 TCN1 transcobalamin I (vitamin B12 binding protein, R binder family)
19 TTCAATAAAA 424299 RPLP1 ribosomal protein, large, P1
18 AAGAAGATAG 419463 RPL23A ribosomal protein L23a
18 ACAAGTACCC 413760 C5orf13 chromosome 5 open reading frame 13
18 AGGAAAGCTG 433411 RPL36 ribosomal protein L36
18 ATTGTTTATG 181163 HMGN2 high-mobility group nucleosomal binding domain 2
18 ATTGTTTATG 380159 KIAA1393 KIAA1393 protein
18 CCCTGCCTTG 82045 MDK midkine (neurite growth-promoting factor 2)
18 CCCTGCCTTG 119000 ACTN1 actinin, alpha 1
18 GAACACATCC 99899 TNFSF7 tumor necrosis factor (ligand) superfamily, member 7
18 GAACACATCC 426977 RPL19 ribosomal protein L19
18 TAATAAAGGT 355986 - ESTs, Highly similar to S25022 ribosomal protein S8, cytosolic - human [H.sapiens]
18 TAATAAAGGT 399720 RPS8 ribosomal protein S8
18 TTACCTCCTT 355815 - Homo sapiens, clone IMAGE:4634703, mRNA, partial cds
17 ATTTGTCCCA 57301 HMGA1 high mobility group AT-hook 1
17 ATTTGTCCCA 356122 - ESTs, Highly similar to A32794 nonhistone chromosomal protein HMG-I - human [H.sapiens]
17 CTAGCCTCAC 14376 ACTG1 actin, gamma 1
17 CTAGCCTCAC 356575 - ESTs
16 CTTCTTGCCC 347939 HBA2 hemoglobin, alpha 2
16 GACGACACGA 153177 RPS28 ribosomal protein S28
16 GGCAAGAAGA 83321 NMB neuromedin B
16 GGCAAGAAGA 405528 RPL27 ribosomal protein L27
16 GTGTAATAAG 232400 HNRPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1
15 AATGCTTTGT 433394 TUBA3 tubulin, alpha 3
15 CCACTGCACT 5338 CA12 carbonic anhydrase XII
15 CCACTGCACT 107003 HEI10 enhancer of invasion 10
15 CGCCGGAACA 286 RPL4 ribosomal protein L4
15 CTCCTCACCT 93213 BAK1 BCL2-antagonist/killer 1
15 CTCCTCACCT 389335 RPL13A ribosomal protein L13a
15 TAAGGAGCTG 50651 JAK1 Janus kinase 1 (a protein tyrosine kinase)
15 TAAGGAGCTG 299465 RPS26 ribosomal protein S26
15 TGGATCCTGA 117848 HBE1 hemoglobin, epsilon 1
15 TGGATCCTGA 386655 HBG2 hemoglobin, gamma G
15 TTCTTGTGGC 182740 RPS11 ribosomal protein S11
14 ACCCGCCGGG - - --
14 GAACCCTTCT - - --
14 GCACAAGAAG 289721 - Homo sapiens mRNA; cDNA DKFZp564D0164 (from clone DKFZp564D0164)
14 TTTTTAATGT 181307 H3F3A H3 histone, family 3A
14 TTTTTAATGT 374544 - ESTs, Highly similar to H3 histone, family 3B [Homo sapiens] [H.sapiens]
13 AACTAATACT 295362 MGC40157 hypothetical protein MGC40157
13 ACTCCAAAAA 75914 RNP24 coated vesicle membrane protein
13 ACTCCAAAAA 438801 - ESTs, Weakly similar to S41161 keratin 9, cytoskeletal - human [H.sapiens]
13 CCAAACGTGT 181307 H3F3A H3 histone, family 3A
13 CCAAACGTGT 356202 - ESTs, Highly similar to H3 histone, family 3B [Homo sapiens] [H.sapiens]
13 TCACAAGCAA 32916 NACA nascent-polypeptide-associated complex alpha polypeptide
13 TTGGGGTTTC 356581 - ESTs, Highly similar to FRIH_HUMAN Ferritin heavy chain (Ferritin H subunit) [H.sapiens]
13 TTGGGGTTTC 418650 FTH1 ferritin, heavy polypeptide 1
13 TTGTTGTTGA 425808 CALM2 calmodulin 2 (phosphorylase kinase, delta)
12 AAAAAAAAAA 11184 UBE2R2 ubiquitin-conjugating enzyme E2R 2
12 AAAAAAAAAA 78713 SLC25A3 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3
12 AGCCCTACAA 95243 TCEAL1 transcription elongation factor A (SII)-like 1
12 CTGTCATTTG 388623 SFRS3 splicing factor, arginine/serine-rich 3
12 GAAGCAGGAC 180370 CFL1 cofilin 1 (non-muscle)
12 GCTTTTTAGA 251064 HMGN1 high-mobility group nucleosome binding domain 1
12 GGTTTGGCTT 73818 UQCRH ubiquinol-cytochrome c reductase hinge protein
12 TCACCCACAC 234518 RPL23 ribosomal protein L23
12 TCGTCTTTAT 301547 RPS7 ribosomal protein S7
12 TTCATACACC - - --
12 TTGGCCAGGC 332156 MAPA monocyte and plasmacytoid activated molecule
12 TTGGCCAGGC 432714 VPS33A vacuolar protein sorting 33A (yeast)
11 AACTAACAAA 25996 - ESTs, Moderately similar to ubiquitin and ribosomal protein S27a precursor; ubiquitin carboxyl extension protein 80; 40S ribosomal protein S27a; ubiquitin; ubiquitin-CEP80 [Homo sapiens] [H.sapiens]
11 AACTAACAAA 311640 RPS27A ribosomal protein S27a
11 AATGGATGAA 152894 PD2 hypothetical protein F23149_1
11 AATGGATGAA 236030 SMARCC2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
11 AATGGATGAA 300700 FLJ20727 hypothetical protein FLJ20727
11 ATTATTTTTC 153 RPL7 ribosomal protein L7
11 ATTATTTTTC 421257 RPL7 ribosomal protein L7
11 CCCCAGCCAG 232165 PRV1 polycythemia rubra vera 1
11 CCCCAGCCAG 414990 RPS3 ribosomal protein S3
11 CCTCCACCTA 432121 PRDX2 peroxiredoxin 2
11 CTCATAGCAG 108636 C1orf9 chromosome 1 open reading frame 9
11 CTCATAGCAG 401448 TPT1 tumor protein, translationally-controlled 1
11 GCAGCCATCC 356371 RPL28 ribosomal protein L28
11 GCCTCAGTTC - - --
11 TCATCATCTG 297753 RPLP2 ribosomal protein, large P2
11 TTTCTGTATG 75103 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
11 TTTCTGTATG 180877 H3F3B H3 histone, family 3B (H3.3B)
10 AACAGAAGCA - - --
10 CAGAGATGAA 75452 HSPA1A heat shock 70kDa protein 1A
10 CTAAGACTTC - - --
10 CTGTGCCCAG 334807 RPL30 ribosomal protein L30
10 CTTTTGCAGC 56145 TMSNB thymosin, beta, identified in neuroblastoma cells
10 GACAAAAAAA 433406 RPS15A ribosomal protein S15a
10 GCACGTGTCT 182825 RPL35 ribosomal protein L35
10 GCCTTCCAAT 76053 DDX5 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA helicase, 68kDa)
10 GGCCGCGTTC 5174 RPS17 ribosomal protein S17
10 GGTCCAGTGT 181013 PGAM1 phosphoglycerate mutase 1 (brain)
10 GGTCCAGTGT 356309 - ESTs, Highly similar to PMG1_HUMAN Phosphoglycerate mutase 1 (Phosphoglycerate mutase isozyme B) (PGAM-B) (BPG-dependent PGAM 1) [H.sapiens]
10 TACAAGAGGA 356672 - ESTs, Highly similar to RL6_HUMAN 60S ribosomal protein L6 (TAX-responsive enhancer element binding protein 107) (TAXREB107) (Neoplasm-related protein C140) [H.sapiens]
10 TACAAGAGGA 409045 RPL6 ribosomal protein L6
10 TCAAATGCAT 356139 - ESTs, Highly similar to heterogeneous nuclear ribonucleoprotein C, isoform b; nuclear ribonucleoprotein particle C1 protein; nuclear ribonucleoprotein particle C2 protein [Homo sapiens] [H.sapiens]
10 TCAAATGCAT 418901 HNRPC heterogeneous nuclear ribonucleoprotein C (C1/C2)
10 TTTCTGCTCC 215158 - Homo sapiens, clone MGC:21394 IMAGE:4754193, mRNA, complete cds
9 AACTAAAAAA 311640 RPS27A ribosomal protein S27a
9 AACTAAAAAA 445593 - ESTs
9 ACAATATCGA 401448 TPT1 tumor protein, translationally-controlled 1
9 ACTACAAATA 426460 RPL9 ribosomal protein L9
9 ACTGGGTCTA 237868 - Homo sapiens mRNA; cDNA DKFZp667P0610 (from clone DKFZp667P0610)
9 ACTGGGTCTA 433416 NME2 non-metastatic cells 2, protein (NM23B) expressed in
9 CAAGTTTGCT 356428 - Homo sapiens mRNA expressed only in placental villi, clone SMAP83.
9 CAAGTTTGCT 422118 EEF1A1 eukaryotic translation elongation factor 1 alpha 1
9 CAATGCTGCC 234518 RPL23 ribosomal protein L23
9 CAGCTCACTG 235422 RPL14 ribosomal protein L14
9 CCCATCCGAA 356175 - ESTs, Highly similar to RL26_HUMAN 60S ribosomal protein L26 [H.sapiens]
9 CCCATCCGAA 406682 RPL26 ribosomal protein L26
9 CCGTCCAAGG 397609 RPS16 ribosomal protein S16
9 CCTTCGAGAT 237924 CGI-69 CGI-69 protein
9 CCTTCGAGAT 356019 RPS5 ribosomal protein S5
9 GATGAGTCTC 233952 PSMA7 proteasome (prosome, macropain) subunit, alpha type, 7
9 GCTTTTAAGG 8102 RPS20 ribosomal protein S20
9 GTGCTGGAGA 424327 SNRPD2 small nuclear ribonucleoprotein D2 polypeptide 16.5kDa
9 GTTTCTTCCC 290874 SELH selenoprotein H
9 GTTTCTTCCC 425808 CALM2 calmodulin 2 (phosphorylase kinase, delta)
9 TACTCTTGGC 2730 HNRPL heterogeneous nuclear ribonucleoprotein L
9 TAGGGCAATC 180139 SMT3H2 SMT3 suppressor of mif two 3 homolog 2 (yeast)
9 TAGGGCAATC 356279 - ESTs, Highly similar to JC4760 SMT3 protein - human [H.sapiens]
9 TCCCTGGCAT 129548 HNRPK heterogeneous nuclear ribonucleoprotein K
9 TCTCCTGCAT 424414 MSX1 msh homeo box homolog 1 (Drosophila)
9 TGAAATAAAA 355719 NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin)
9 TGAAATAAAA 361171 - ESTs
9 TGCAGAAGGA 15301 NY-REN-25 NY-REN-25 antigen
9 TGCAGAAGGA 322735 KIAA1522 KIAA1522 protein
9 TGCTTCATCT 10842 RAN RAN, member RAS oncogene family
9 TGGTACACGT 279574 GRIM19 cell death-regulatory protein GRIM19
9 TGTGATCAGA 107476 ATP5L ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g
9 TTATGGGATC 5662 GNB2L1 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1
9 TTTAACGGCC - - --
9 TTTCAGAGAG 75975 SRP9 signal recognition particle 9kDa
9 TTTCAGAGAG 197345 G22P1 thyroid autoantigen 70kDa (Ku antigen)
9 TTTGCACCTT 75511 CTGF connective tissue growth factor
9 TTTGCACCTT 181163 HMGN2 high-mobility group nucleosomal binding domain 2
8 ACCCTTGGCC - - --
8 AGCTGTTTCT 44159 FLJ21615 hypothetical protein FLJ21615
8 AGCTGTTTCT 389335 RPL13A ribosomal protein L13a
8 ATAGTAGCTT 118400 FSCN1 fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)
8 ATGTAGTAGT 406404 HNRPD heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)
8 ATGTGAAGAG 111779 SPARC secreted protein, acidic, cysteine-rich (osteonectin)
8 ATGTGAAGAG 406409 MYO1F myosin IF
8 CAATAAATGT 337445 RPL37 ribosomal protein L37
8 CAATAAATGT 446130 - ESTs
8 CGGCTGGTGA 407981 PSMB1 proteasome (prosome, macropain) subunit, beta type, 1
Top of page Table of Contents COGENE Home cDNA Libraries SAGE Data Next set of SAGE tags Beginning SAGE tag list End SAGE tag list

Last updated Mon May 19 12:12:06 CDT 2003 ;