COGENE Literature Comparisons

COGENE SAGE Tags from Ubiquitously Expressed Genes

All 26 day embryonic RNA (Carnegie 12, source R318) SAGE tags were compared with the ubiquitously expressed set of 1185 genes described by V.E. Velculescu et al., Nature Genet. 23, 387388 (1999) [Table 6]. The following 1050 COGENE SAGE tags match this set (updated 9/14/00, previous version) :

#Times Sequenced	COGENE SAGE Tag	UniGene Accession No.	UniGene Description
620	TTGGTCCTCT	108124	ribosomal protein L41
393	TCCCTATTAA
359	GTGACCACGG	36451	glutamate receptor, ionotropic, N-methyl D-aspartate 2C
359	GTGACCACGG	36451	glutamate receptor, ionotropic, N-methyl D-aspartate 2C
311	AGGCTACGGA	119122	ribosomal protein L13a
271	CCAGAACAGA	111222	ribosomal protein L30
271	CCAGAACAGA	111222	ribosomal protein L30
265	CACAAACGGT	195453	ribosomal protein S27 (metallopanstimulin 1)
261	ATAATTCTTT	539	ribosomal protein S29
238	TGTGTTGAGA	181165	eukaryotic translation elongation factor 1 alpha 1
213	TCAGATCTTT	75344	ribosomal protein S4, X-linked
201	AAGACAGTGG	184109	ribosomal protein L37a
200	TTACCATATC	177461	ribosomal protein L39
200	CCCGTCCGGA	180842	ribosomal protein L13
194	TGCACGTTTT	169793	ribosomal protein L32
188	TAGGTTGTCT	119252	tumor protein, translationally-controlled 1
188	ATTCTCCAGT	234518	ribosomal protein L23
185	GCATAATAGG	184108	ribosomal protein L21
184	GGACCACTGA	119598	ribosomal protein L3
173	GTGAAGGCAG	77039	ribosomal protein S3A
171	GAAAAATGGT	181357	laminin receptor 1 (67kD, ribosomal protein SA)
165	GGATTTGGCC	119500	karyopherin alpha 4 (importin alpha 3)
165	GGATTTGGCC	119500	karyopherin alpha 4 (importin alpha 3)
165	GGATTTGGCC	119500	karyopherin alpha 4 (importin alpha 3)
164	TACCATCAAT	195188	glyceraldehyde-3-phosphate dehydrogenase
160	CTGGGTTAAT	126701	ribosomal protein S19
158	TGTACCTGTA	169476	tubulin, alpha, ubiquitous
158	AAGGAGATGG	184014	ribosomal protein L31
157	GAGGGAGTTT	76064	ribosomal protein L27a
153	CGCCGCCGGC	182825	ribosomal protein L35
143	GGCAAGCCCC	252574	ribosomal protein L10a
143	CCTAGCTGGA	182937	peptidylprolyl isomerase A (cyclophilin A)
142	GTAATCCTGC	186571	ATPase, Na+/K+ transporting, alpha 3 polypeptide
142	AAGGTGGAGG	163593	ribosomal protein L18a
141	CCCATCGTCC	mito	Tag matches mitochondrial sequence
135	TGGCGTACGG	ribo	Tag matches ribosomal RNA sequence
132	TTCAATAAAA	177592	ribosomal protein, large, P1
132	TTCAATAAAA	177592	ribosomal protein, large, P1
127	TGGTGTTGAG	75362	ribosomal protein S18
126	ATGGCTGGTA	182426	ribosomal protein S2
126	AATAGGTCCA	113029	ribosomal protein S25
124	ACATCATCGA	182979	ribosomal protein L12
122	AGCTCTCCCT	82202	ribosomal protein L17
115	TGGGCAAAGC	2186	eukaryotic translation elongation factor 1 gamma
113	GCCTGTATGA	180450	ribosomal protein S24
97	TAATAAAGGT	151604	ribosomal protein S8
97	CTGCTATACG	180946	ribosomal protein L5
96	CTGTTGGTGA	3463	ribosomal protein S23
96	AGCACCTCCA	75309	eukaryotic translation elongation factor 2
93	GGCAAGAAGA	111611	ribosomal protein L27
91	TGTGCTAAAT	250895	ribosomal protein L34
91	ATTGTTTATG	181163	high-mobility group (nonhistone chromosomal) protein 17
88	CCTGTAATCC
88	CCTGTAATCC
88	CCTGTAATCC
88	CCTGTAATCC
88	CCTGTAATCC
88	CCTGTAATCC
88	CCTGTAATCC
88	CCTGTAATCC
88	CCTGTAATCC
88	CCTGTAATCC
88	CCTGTAATCC
88	CCTGTAATCC
88	CCTGTAATCC
88	CCTGTAATCC
88	CCTGTAATCC
88	CCTGTAATCC
88	CCTGTAATCC
88	CCTGTAATCC
88	CCTGTAATCC
86	TTGGTGAAGG	75968	thymosin, beta 4, X chromosome
85	GTTCGTGCCA	179666	ribosomal protein L35a
84	CACCTAATTG	mito	Tag matches mitochondrial sequence
81	AGGAAAGCTG	76437	DKFZP566B023 protein
80	GCAGCCATCC	4437	ribosomal protein L28
79	CTGTTGATTG	249495	heterogeneous nuclear ribonucleoprotein A1
76	GGGCTGGGGT	183698	ribosomal protein L29
76	GGGCTGGGGT	183698	ribosomal protein L29
75	CCCATCCGAA	91379	ribosomal protein L26
75	CCAAACGTGT	181307	H3 histone, family 3A
69	TCACCCACAC	234518	ribosomal protein L23
69	TCACCCACAC	234518	ribosomal protein L23
68	GTGTTGCACA	165590	ribosomal protein S13
66	ATCAAGGGTG	157850	ribosomal protein L9
64	CCACTGCACT
64	CCACTGCACT
64	CCACTGCACT
64	CCACTGCACT
64	CCACTGCACT
64	CCACTGCACT
64	CCACTGCACT
64	CCACTGCACT
64	CCACTGCACT
64	CCACTGCACT
64	CCACTGCACT
64	CCACTGCACT
64	CCACTGCACT
64	CCACTGCACT
63	CGCTGGTTCC	179943	ribosomal protein L11
63	AGCCCTACAA	mito	Tag matches mitochondrial sequence
61	GTGTTAACCA	74267	ribosomal protein L15
60	TTGGGGTTTC	62954	ferritin, heavy polypeptide 1
58	CTAAGACTTC	mito	Tag matches mitochondrial sequence
57	GCTTTTTAGA	251064	high-mobility group (nonhistone chromosomal) protein 14
57	GCCGTGTCCG	241507	ribosomal protein S6
57	GACGACACGA	153177	ribosomal protein S28
56	TCGTCTTTAT	75538	ribosomal protein S7
55	GTGAAACCCC
55	GTGAAACCCC
55	GTGAAACCCC
55	GTGAAACCCC
55	GTGAAACCCC
55	GTGAAACCCC
55	GTGAAACCCC
55	GTGAAACCCC
55	GTGAAACCCC
55	GTGAAACCCC
55	GTGAAACCCC
55	GTGAAACCCC
55	GTGAAACCCC
55	GTGAAACCCC
55	GTGAAACCCC
55	AACGCGGCCA	73798	macrophage migration inhibitory factor (glycosylation-inhibiting factor)
54	CAATAAATGT	179779	ribosomal protein L37
53	TGAGGGAATA	83848	triosephosphate isomerase 1
52	TTGGAGATCT	108661	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4 (9kD, MLRQ)
52	GCCGAGGAAG	82148	ribosomal protein S12
51	AAGAAGATAG	184776	ribosomal protein L23a
49	CCGACGGGCG
48	TAGGGCAATC	180139	SMT3 (suppressor of mif two 3, yeast) homolog 2
48	GTGCTGAATG	77385	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle
47	GTGTAATAAG	75598	heterogeneous nuclear ribonucleoprotein A2/B1
47	AATCCTGTGG	178551	ribosomal protein L8
45	TTGGCCAGGC
45	TTGGCCAGGC
45	TTGGCCAGGC
45	TTGGCCAGGC
45	TTGGCCAGGC
45	TTGGCCAGGC
45	TTGGCCAGGC
45	TTCTTGTGGC	182740	ribosomal protein S11
45	TCACAAGCAA	146763	nascent-polypeptide-associated complex alpha polypeptide
44	TCCCCGTACA
44	AACTAATACT	118724	DR1-associated protein 1 (negative cofactor 2 alpha)
43	GAACACATCC	75879	ribosomal protein L19
43	CTCCTCACCT	242908	lecithin-cholesterol acyltransferase
43	CTCCTCACCT	242908	lecithin-cholesterol acyltransferase
43	CTCAACATCT	73742	ribosomal protein, large, P0
42	TTACCTCCTT	3343	3-phosphoglycerate dehydrogenase
41	GCACAAGAAG	81634	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit b, isoform 1
41	CGCCGGAACA	286	ribosomal protein L4
40	TGTGATCAGA	107476	ATP synthase, H+ transporting, mitochondrial F1F0, subunit g
40	TAAGGAGCTG	77904	ribosomal protein S26
40	CTAGCCTCAC	14376	actin, gamma 1
39	GTGACAGAAG	129673	eukaryotic translation initiation factor 4A, isoform 1
39	CCTTCGAGAT	76194	ribosomal protein S5
39	CCCCAGCCAG	252259	ribosomal protein S3
37	GGAAAAAAAA	177530	RuvB (E coli homolog)-like 1
37	GGAAAAAAAA	177530	RuvB (E coli homolog)-like 1
37	GCTTTTAAGG	8102	ribosomal protein S20
37	GAAATGTAAG	63525	poly(rC)-binding protein 2
37	GAAATGTAAG	63525	poly(rC)-binding protein 2
36	TTCATACACC	mito	Tag matches mitochondrial sequence
36	ACTCCAAAAA	133230	ribosomal protein S15
36	ACTCCAAAAA	133230	ribosomal protein S15
35	TTCATTATAA	182371	prothymosin, alpha (gene sequence 28)
34	TTGTAATCGT	125078	Human mRNA for ornithine decarboxylase antizyme, ORF 1 and ORF 2
34	TCCTATTAAG
34	GGGGAAATCG	76293	thymosin, beta 10
34	GCTTTATTTG	180952	actin, beta
34	GCATTTAAAT	261802	eukaryotic translation elongation factor 1 beta 2
34	ACTTACCTGC	174031	cytochrome c oxidase subunit VIb
33	TTTCAGAGAG	75975	signal recognition particle 9kD
33	TTTCAGAGAG	75975	signal recognition particle 9kD
33	TTGTTGTTGA	182278	calmodulin 2 (phosphorylase kinase, delta)
33	TGCTTCATCT	10842	Homo sapiens GTP binding protein mRNA, complete cds
33	TGCTTCATCT	10842	Homo sapiens GTP binding protein mRNA, complete cds
33	GGTTTGGCTT	73818	ubiquinol-cytochrome c reductase hinge protein
32	GGGTTTTTAT	74497	nuclease sensitive element binding protein 1
32	GGAATGTACG	429	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9) isoform 3
30	TTTTGAAGCA	80464	hepatitis B virus x-interacting protein (9.6kD)
30	TCTTGTGCAT	2795	lactate dehydrogenase A
30	TCAAATGCAT	182447	heterogeneous nuclear ribonucleoprotein C (C1/C2)
30	GTGATGGTGT	197345	thyroid autoantigen 70kD (Ku antigen)
30	GTGAAACCCT
30	GTGAAACCCT
30	GTGAAACCCT
30	GTGAAACCCT
30	GTGAAACCCT
30	GTGAAACCCT
30	GCTCAGCTGG	223241	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
30	GAAATGATGA	80686	prefoldin 5
30	CTGTCATTTG	167460	Homo sapiens mRNA; cDNA DKFZp566L0424 (from clone DKFZp566L0424)
29	GGTCCAGTGT	181013	phosphoglycerate mutase 1 (brain)
28	TACAAGAGGA	174131	ribosomal protein L6
28	CATCTTCACC	113029	ribosomal protein S25
27	GAAGCAGGAC	180370	cofilin 1 (non-muscle)
26	GATGCTGCCA	268446	ribosomal protein L22
26	ACTGGGTCTA	250871	non-metastatic cells 2, protein (NM23B) expressed in
25	TGAAATAAAA	173205	nucleophosmin (nucleolar phosphoprotein B23, numatrin)
25	GCTGTTGCGC	8102	ribosomal protein S20
25	CCTATTTACT	113205	cytochrome c oxidase subunit IV
25	ATTAACAAAG	113368	guanine nucleotide binding protein (G protein), alpha stimulating activity polypeptide 1
25	AAGGTCGAGC	184582	ribosomal protein L24
25	AACGACCTCG	179661	Homo sapiens clone 24703 beta-tubulin mRNA, complete cds
24	TCTGTCAAGA	76572	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit (oligomycin sensitivity conferring protein)
24	TCCCATTAAG
24	GTTAACGTCC	178391	Homo sapiens Bruton's tyrosine kinase (BTK), alpha-D-galactosidase A (GLA), L44-like ribosomal protein (L44L) and FTP3 (FTP3) genes, complete cds
24	GTGCTGGAGA	53125	small nuclear ribonucleoprotein D2 polypeptide (16.5kD)
24	AAAAGAAACT	172182	poly(A)-binding protein, cytoplasmic 1
23	TAGTTGAAGT	131255	ubiquinol-cytochrome c reductase binding protein
23	TACTAGTCCT	180532	heat shock 90kD protein 1, alpha
23	GACTCTGGTG	2953	ribosomal protein S15a
23	GACTCTGGTG	2953	ribosomal protein S15a
23	GAAAAAAAAA
23	CTCATAGCAG	119252	tumor protein, translationally-controlled 1
23	CAGCAGAAGC	44499	pinin, desmosome associated protein
23	ATGGCAAGGG	118724	DR1-associated protein 1 (negative cofactor 2 alpha)
23	AGCCTTTGTT	9930	collagen-binding protein 2 (colligen 2)
23	AACTAAAAAA	3297	ribosomal protein S27a
23	AAAACATTCT	mito	Tag matches mitochondrial sequence
22	GGCCATCTCT	74405	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
22	GCCTGCTGGG	2706	glutathione peroxidase 4 (phospholipid hydroperoxidase)
22	ATCAGTGGCT	89545	proteasome (prosome, macropain) subunit, beta type, 4
22	ACAGTGGGGA	75839	zinc finger protein 6 (CMPX1)
21	TTGGTCAGGC
21	TTGGTCAGGC
21	TCCTCAAGAT	118757	enhancer of rudimentary (Drosophila) homolog
21	GTTCCCTGGC	177415	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived); ribosomal protein S30
21	GAGGTCCCTG	74077	proteasome (prosome, macropain) subunit, alpha type, 6
21	CCTCGGAAAA	2017	ribosomal protein L38
20	TACTCTTGGC	2730	heterogeneous nuclear ribonucleoprotein L
20	GGCCTTTTTT	78851	KIAA0217 protein
20	GGCCTTTTTT	78851	KIAA0217 protein
20	GCGACGAGGC	2017	ribosomal protein L38
20	AGCACATTTG	29748	ESTs, Highly similar to deduced protein product shows significant homology to coactosin from Dictyostelium discoideum [H.sapiens]
19	TTATGGGATC	5662	guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1
19	TGGTGACAGT	9242	purine-rich element binding protein B
19	TGGTACACGT	242463	keratin 8
19	TGCATCTGGT	75410	heat shock 70kD protein 5 (glucose-regulated protein, 78kD)
19	TCTTCCAGGA	74267	ribosomal protein L15
19	TCCCTGGCAT	129548	heterogeneous nuclear ribonucleoprotein K
19	GTTTCTTCCC	8693	ESTs, Weakly similar to !!!! ALU SUBFAMILY SX WARNING ENTRY !!!! [H.sapiens]
19	GCCAGCCCAG	228059	KRAB-associated protein 1
19	AACTCTTGAA	58189	eukaryotic translation initiation factor 3, subunit 3 (gamma, 40kD)
18	TTTTCTGAAA	76136	thioredoxin
18	TGATTTCACT	mito	Tag matches mitochondrial sequence
18	TGATTTCACT	mito	Tag matches mitochondrial sequence
18	TCTGCTTACA	74267	ribosomal protein L15
18	TCCTAGCCTG	74711	splicing factor similar to dnaJ
18	TAAAAAAAAA
18	TAAAAAAAAA
18	TAAAAAAAAA
18	CTGAGACAAA	101025	basic transcription factor 3
18	CGGCTGGTGA	75748	proteasome (prosome, macropain) subunit, beta type, 1
18	CAAGCATCCC	mito	Tag matches mitochondrial sequence
18	AGGCGAGATC	233952	proteasome (prosome, macropain) subunit, alpha type, 7
17	TACCAGTGTA	79037	heat shock 60kD protein 1 (chaperonin)
17	GGGTCAAAAG	181307	H3 histone, family 3A
17	GATGAGTCTC	233952	proteasome (prosome, macropain) subunit, alpha type, 7
17	GACCAGAAAA	180714	cytochrome c oxidase subunit VIa polypeptide 1
17	CTGTACAGAC	251653	tubulin, beta, 2
17	ATGACTCAAG	239752	nuclear receptor subfamily 2, group F, member 6
17	ATGACTCAAG	239752	nuclear receptor subfamily 2, group F, member 6
17	AGTGCAAGAC
17	ACTCAGAAGA	198272	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2 (8kD, AGGG)
16	TGGCTAGTGT	118065	proteasome (prosome, macropain) subunit, beta type, 7
16	TCCCGTACAT
16	GGGGACTGAA	3709	low molecular mass ubiquinone-binding protein (9.5kD)
16	GGCTGGGGGC	75721	profilin 1
16	GCGACAGCTC	184582	ribosomal protein L24
16	GCCTTCCAAT	76053	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA helicase, 68kD)
16	GAAACCGAGG	109822	ESTs, Highly similar to HSPC014 [H.sapiens]
16	GAAACCGAGG	109822	ESTs, Highly similar to HSPC014 [H.sapiens]
16	CTGTTGGCAT	184108	ribosomal protein L21
16	CGTGTTAATG	2110	zinc finger protein 9 (a cellular retroviral nucleic acid binding protein)
16	CACAGGCAAA	155291	KIAA0005 gene product
16	ATTTGAGAAG
16	ATGTACTCTG	75432	IMP (inosine monophosphate) dehydrogenase 2
16	AGAACAAAAC	180909	proliferation-associated gene A (natural killer-enhancing factor A)
16	AACTAACAAA	3297	ribosomal protein S27a
15	TTTCTAGTTT	111894	KIAA0108 gene product
15	TTGGCCAGGA	170144	ESTs
15	TGGAATGCTG	7744	NADH dehydrogenase (ubiquinone) flavoprotein 1 (51kD)
15	GGAGCTCTGT	227750	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4 (15kD, B15)
15	GCTGCCCTTG	248323	Tubulin, alpha, brain-specific
15	GCTGCCCTTG	248323	Tubulin, alpha, brain-specific
15	GCGCTGGAGT	110695	ESTs, Weakly similar to B0495.6 [C.elegans]
15	CCGTCCAAGG	80617	ribosomal protein S16
15	ATCACGCCCT
15	AATGCAGGCA	172673	S-adenosylhomocysteine hydrolase
14	TGTAGTTTGA	182643	transcription elongation factor B (SIII), polypeptide 1-like
14	GTGGTACAGG	263595	ESTs, Highly similar to PUTATIVE PEROXISOMAL ANTIOXIDANT ENZYME [H.sapiens]
14	GTGGTACAGG	263595	ESTs, Highly similar to PUTATIVE PEROXISOMAL ANTIOXIDANT ENZYME [H.sapiens]
14	GTAAGTGTAC	153423	ESTs
14	GTAAGTGTAC	153423	ESTs
14	GAGGCCATCC	70830	U6 snRNA-associated Sm-like protein LSm7
14	CCCTTAGCTT	233936	myosin, light polypeptide, regulatory, non-sarcomeric (20kD)
14	CCAGTGGCCC	180920	ribosomal protein S9
14	CACTTGCCCT	272179	ESTs, Highly similar to NADH:ubiquinone oxidoreductase B22 subunit [H.sapiens]
14	CACTTGCCCT	272179	ESTs, Highly similar to NADH:ubiquinone oxidoreductase B22 subunit [H.sapiens]
14	AGGTCCTAGC	226795	glutathione S-transferase pi
14	ACCCTTGGCC	mito	Tag matches mitochondrial sequence
13	TTTGTGACTG	239737	C-terminal binding protein 1
13	TTGGCAGCCC	76064	ribosomal protein L27a
13	TGGCTGTGTG	25709	ESTs, Weakly similar to MAX BINDING PROTEIN MNT [H.sapiens]
13	TCAGGCATTT	5566	ESTs, Highly similar to RAS-RELATED PROTEIN RAB-1A [M.musculus]
13	GGGGTAAGAA	80423	prostatic binding protein
13	GGCCTGCTGC	155894	protein tyrosine phosphatase, non-receptor type 1
13	CTGTGCATTT	172207	non-Pou domain-containing octamer (ATGCAAAT) binding protein
13	CCGGGTGATG	183373	ATX1 (antioxidant protein 1, yeast) homolog 1
13	CCATTGCACT
13	CCAGGAGGAA	180414	heat shock 70kD protein 10 (HSC71)
13	CAAATGAGGA	256267	neuroblastoma RAS viral (v-ras) oncogene homolog
13	ATAGAGGCAA	173714	MORF-related gene X
13	AGTTTCCCAA	75854	SULT1C sulfotransferase
13	AGGTCAGGAG
13	AGGTCAGGAG
13	AGGTCAGGAG
13	AAGATCCCCG	107187	divalent cation tolerant protein CUTA
12	TTCTCTCTGT	77541	ADP-ribosylation factor 5
12	TGTAAGTCTG	119537	GAP-associated tyrosine phosphoprotein p62 (Sam68)
12	GTGACCTCCT	81097	cytochrome c oxidase subunit VIII
12	GTCACACCAC	182371	prothymosin, alpha (gene sequence 28)
12	GTCACACCAC	182371	prothymosin, alpha (gene sequence 28)
12	GGCTTTGGAG	90918	defensin, alpha 1, myeloid-related sequence
12	GGCCGCGTTC	5174	ribosomal protein S17
12	GCCTCCTCCC	170120	muscle specific gene
12	GAATCCAACT	44143	ESTs, Weakly similar to SNF2alpha protein [H.sapiens]
12	GAAGATGTGT	112318	Homo sapiens mRNA for 6.2 kd protein
12	GAAACAAGAT	78771	phosphoglycerate kinase 1
12	CTGGCGCCGA	183180	ESTs, Weakly similar to RING finger protein [H.sapiens]
12	CTGCTGAGTG	79259	ESTs, Weakly similar to C04H5.1 [C.elegans]
12	CTGCCAAGTT	75873	zyxin
12	CTCATAAGGA	mito	Tag matches mitochondrial sequence
12	CGCCGCGGTG	4835	eukaryotic translation initiation factor 3, subunit 8 (110kD)
12	CCCTGATTTT	183684	eukaryotic translation initiation factor 4 gamma, 2
12	CAGCTCACTG	158675	ribosomal protein L14
12	AGGGTGTTTT	mito	Tag matches mitochondrial sequence
12	AGGGTGTTTT	mito	Tag matches mitochondrial sequence
12	AGGGCTTCCA	29797	ribosomal protein L10
12	AATTTGCAAC	75258	H2A histone family, member Y
11	TTGTAAAAGG	106357	valosin-containing protein
11	TTGCCCAGGC
11	TTGCCCAGGC
11	TTACTAAATG	155560	calnexin
11	TCCGCGAGAA	1665	zinc finger protein homologous to Zfp-36 in mouse
11	TCAGACGCAG	182371	prothymosin, alpha (gene sequence 28)
11	TACCCCACCC	7647	MYC-associated zinc finger protein (purine-binding transcription factor)
11	TACCCCACCC	7647	MYC-associated zinc finger protein (purine-binding transcription factor)
11	GTAAGATTTG	5417	oxygen regulated protein (150kD)
11	GGCTTTACCC	119140	eukaryotic translation initiation factor 5A
11	GGCCCTCTGA	161362	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1
11	GGATTGTCTG	83753	small nuclear ribonucleoprotein polypeptides B and B1
11	GCTTCCATCT	55296	HLA-B associated transcript-1
11	GCTTCCATCT	55296	HLA-B associated transcript-1
11	GACGTGTGGG	119192	H2A histone family, member Z
11	GACATATGTA	75752	cytochrome c oxidase subunit VIIb
11	GAATCACTGC	14454	chromosome 2 open reading frame 1
11	GAAGCTTTGC	180532	heat shock 90kD protein 1, alpha
11	CTGCTGTGAT	1063	small nuclear ribonucleoprotein polypeptide C
11	CCCCGCCAAG	169718	calponin 2
11	CATTTGTAAT	mito	Tag matches mitochondrial sequence
11	CATCTAAACT	180900	Williams-Beuren syndrome chromosome region 1
11	AGACCAAAGT	82646	heat shock 40kD protein 1
11	AAGCTGAGTG	79024	N-acetylglucosamine receptor 1 (thyroid)
10	TTGAGCCAGC	91142	KH-type splicing regulatory protein (FUSE-binding protein 2)
10	TGTGCTCGGG	76847	KIAA0088 protein
10	TGCCTCTGCG	75564	CD151 antigen
10	TGAGAGGGTG	74405	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
10	TGAAGGAGCC	89399	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 2
10	TCCTGCCCCA	171814	parathymosin
10	TCCTGCCCCA	171814	parathymosin
10	TCCCTATAAG
10	TAATGGTAAC	181028	cytochrome c oxidase subunit Va
10	GGTGGCACTC	77273	ras homolog gene family, member A
10	GGTAGCCTGG	108327	damage-specific DNA binding protein 1 (127kD)
10	GGGGCAGGGC	119140	eukaryotic translation initiation factor 5A
10	GGGGCAGGGC	119140	eukaryotic translation initiation factor 5A
10	GGCTCCCACT	74335	heat shock 90kD protein 1, beta
10	GCATAGGCTG	12084	Tu translation elongation factor, mitochondrial
10	GCAGCTCAGG	167137	ESTs, Moderately similar to CATHEPSIN D PRECURSOR [H.sapiens]
10	CTGTTAGTGT	75375	malate dehydrogenase 1, NAD (soluble)
10	CTGCCAACTT	180370	cofilin 1 (non-muscle)
10	CGGTTACTGT	49767	NADH dehydrogenase (ubiquinone) Fe-S protein 6 (13kD) (NADH-coenzyme Q reductase)
10	CCTGTAGTCC
10	CCTGTAATCT
10	CCGTGGTCGT	99853	fibrillarin
10	CCCTGGGTTC	111334	ferritin, light polypeptide
10	CAGTTCTCTG	75927	Human BTK region clone ftp-3 mRNA
10	CAACATTCCT	180015	D-dopachrome tautomerase
10	CAAAATCAGG	79933	cyclin I
10	AGCCAAAAAA	63525	poly(rC)-binding protein 2
10	ACTAACACCC	mito	Tag matches mitochondrial sequence
10	ACAAACTTAG	177656	calmodulin 1 (phosphorylase kinase, delta)
10	AACTGCGGCA	63908	ESTs
9	TTTTGTGTGA	182698	ESTs
9	TTCTGGCTGC	119251	ubiquinol-cytochrome c reductase core protein I
9	TTCTGGCTGC	119251	ubiquinol-cytochrome c reductase core protein I
9	TTCACAAAGG	76913	proteasome (prosome, macropain) subunit, alpha type, 5
9	TGAGGCCAGG	79162	structure specific recognition protein 1
9	TCTTTACTTG	6895	actin related protein 2/3 complex, subunit 3 (21 kD)
9	TCTGTTTATC	180394	signal recognition particle 14kD (homologous Alu RNA-binding protein)
9	TAGATAATGG	179661	Homo sapiens clone 24703 beta-tubulin mRNA, complete cds
9	TACGTTGCAG	21756	translation factor sui1 homolog
9	TACATTCTGT	86386	myeloid cell leukemia sequence 1 (BCL2-related)
9	TAAACTGTTT	3491	ribosomal protein S14
9	TAAACTGTTT	3491	ribosomal protein S14
9	GTATTCCCCT	117176	poly(A)-binding protein, nuclear 1
9	GTATTCCCCT	117176	poly(A)-binding protein, nuclear 1
9	GCTGGCTGGC	108809	chaperonin containing TCP1, subunit 7 (eta)
9	GCAAAACCAG	15071	chaperonin containing TCP1, subunit 8 (theta)
9	GAGCGGGATG	77060	proteasome (prosome, macropain) subunit, beta type, 6
9	GACTCACTTT	699	peptidylprolyl isomerase B (cyclophilin B)
9	GAAGTTATGA	4112	t-complex 1
9	GAAGATGTGG	250911	interleukin 13 receptor, alpha 1
9	CGATTCTGGA	177507	Ras homolog enriched in brain 2
9	CCTCCCCCGT	268763	Breakpoint cluster region protein, uterine leiomyoma, 1; barrier to autointegration factor
9	CCCCAGTTGC	74451	calpain, small polypeptide
9	ATGGCGATCT	180450	ribosomal protein S24
9	ATCCACATCG	119503	methionine-tRNA synthetase
8	TTTTTGTACA	78040	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1
8	TTTCAGATTG	74861	activated RNA polymerase II transcription cofactor 4
8	TTGGGAGCAG	172801	isoleucine-tRNA synthetase
8	TTGCTAGAGG	272175	ESTs, Highly similar to HSPC024-iso [H.sapiens]
8	TGGGCGCCTT	78601	uroporphyrinogen decarboxylase
8	TGAAGTAACA	150580	putative translation initiation factor
8	TCTGGTCTGG	184488	flotillin 2
8	TACATCCGAA	21321	Homo sapiens mRNA; cDNA DKFZp564E1363 (from clone DKFZp564E1363)
8	GCTCCGAGCG	80617	ribosomal protein S16
8	GAAATACAGT	67201	ESTs
8	GAAATACAGT	67201	ESTs
8	CTTGTAATCC	183253	ESTs, Weakly similar to !!!! ALU SUBFAMILY J WARNING ENTRY !!!! [H.sapiens]
8	CCCGACGTGC	198269	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3 (9kD, B9)
8	CAGCCTTGGA	269759	ESTs, Highly similar to ribonucleoprotein RBM8 [H.sapiens]
8	CAAAAAAAAA
8	ATCCATCTGT	63525	poly(rC)-binding protein 2
8	AGCCACCGTG
8	AGCAGGGCTC	100623	phospholipase C, beta 3, neighbor pseudogene
8	AGCAGATCAG	119301	S100 calcium-binding protein A10 (annexin II ligand, calpactin I, light polypeptide (p11))
8	ACAACTCAAT	75922	brain protein I3
8	AAGCCAGGAC	10326	coatomer protein complex, subunit epsilon
7	TGCTTTGGGA	84344	ESTs, Highly similar to CGI-135 protein [H.sapiens]
7	TCTCTACCCA	64797	amyloid beta (A4) precursor-like protein 2
7	TCTCAATTCT	146409	cell division cycle 42 (GTP-binding protein, 25kD)
7	TCAATCAAGA	75544	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide
7	TACACGTGAG	11156	ESTs, Weakly similar to hypothetical protein, similar to [H.sapiens]
7	GTGGCAGGTG
7	GGGCCAGGGG	111099	ESTs, Weakly similar to tropomyosin isoform 34 [D.melanogaster]
7	GGAAGCACGG	148495	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4
7	GGAAGCACGG	148495	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4
7	GCCCTCGGCC	17883	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform
7	GCAAAAAAAA
7	GACTGTGCCA	5120	dynein, cytoplasmic, light polypeptide
7	CTGTGCTCGG	76394	enoyl Coenzyme A hydratase, short chain, 1, mitochondrial
7	CTGGGCCTGG	74573	similar to vaccinia virus HindIII K4L ORF
7	CGCACCATTG	2953	ribosomal protein S15a
7	CCTTTGAACA	181634	Human Chromosome 16 BAC clone CIT987SK-A-61E3
7	CCTGAGCCCG	68571	ESTs, Weakly similar to Lpe5p [S.cerevisiae]
7	CAGGAACGGG	72241	mitogen-activated protein kinase kinase 2
7	ATGGCCATAG	155206	serine/threonine kinase 25 (Ste20, yeast homolog)
7	ATGGAGACTT	239760	citrate synthase
7	AGTAGGTGGC	181368	U5 snRNP-specific protein (220 kD), ortholog of S. cerevisiae Prp8p
7	AGGTGGCAAG	mito	Tag matches mitochondrial sequence
7	AGGGGCGCAG	97616	SH3-domain GRB2-like 1
7	AGAAAAAAAA	254105	enolase 1, (alpha)
7	AGAAAAAAAA	254105	enolase 1, (alpha)
7	ACGTGGTGAT	24003	ESTs, Moderately similar to LEYDIG CELL TUMOR 10 KD PROTEIN [R.norvegicus]
7	ACCTCAGGAA	177516	high density lipoprotein binding protein (vigilin)
7	AAGTCATTCA	250673	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (14kD, B14)
7	AAGTCATTCA	250673	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (14kD, B14)
7	AACCCGGGAG	74316	desmoplakin (DPI, DPII)
7	AACCCGGGAG	74316	desmoplakin (DPI, DPII)
7	AACCCGGGAG	74316	desmoplakin (DPI, DPII)
6	TTTTGGGGGC	26683	ESTs, Weakly similar to gag {provirus} [M.musculus]
6	TTTTGGGGGC	26683	ESTs, Weakly similar to gag {provirus} [M.musculus]
6	TTCCTATTAA	167510	ESTs
6	TGTTCATCAT	65450	neuroendocrine-specific protein C like (foocen)
6	TGGTTTTTGG	76057	lysophospholipase II
6	TGGATCCTAG	5273	NADH dehydrogenase (ubiquinone) Fe-S protein 3 (30kD) (NADH-coenzyme Q reductase)
6	TGCTGGGTGG	198273	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8 (19kD, ASHI)
6	TGCTGGGTGG	198273	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8 (19kD, ASHI)
6	TGCACCACAG	9534	signal peptidase complex (18kD)
6	TGATTAAGGT	200478	ubiquitin-conjugating enzyme E2M (homologous to yeast UBC12)
6	TCTGTACACC	182740	ribosomal protein S11
6	TCTGCTAAAG	189509	high-mobility group (nonhistone chromosomal) protein 1
6	TCTGCTAAAG	189509	high-mobility group (nonhistone chromosomal) protein 1
6	TCGTCGCAGA	19561	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (14.5kD, B14.5a)
6	TCCCTATTAG
6	TCAGAAGGTG	184008	ESTs, Weakly similar to RNA-binding protein AUF1 [H.sapiens]
6	TAGCTCTATG	190703	ATPase, Na+/K+ transporting, alpha 1 polypeptide
6	TACCCTAAAA
6	TACCCTAAAA
6	TACCCTAAAA
6	TAAGTAGCAA	239625	integral membrane protein 2B
6	GTGGGGCTAG	75180	protein phosphatase 5, catalytic subunit
6	GTGGCGGGCG	229116	EST
6	GTGGCGGGCG	229116	EST
6	GTGGCGGGCG	229116	EST
6	GTGGACCCTG	7236	ESTs, Highly similar to CGI-25 protein [H.sapiens]
6	GTGGACCCTG	7236	ESTs, Highly similar to CGI-25 protein [H.sapiens]
6	GTGACAACAC	149155	voltage-dependent anion channel 1
6	GGTGAGACCT	80423	prostatic binding protein
6	GGGGGTCACC	80986	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1
6	GGCCCTGAGC	71618	polymerase (RNA) II (DNA directed) polypeptide L (7.6kD)
6	GGAGTGGACA	75458	ribosomal protein L18
6	GGAGTCATTG	82793	proteasome (prosome, macropain) subunit, beta type, 3
6	GGAGGCTGAG	185973	membrane fatty acid (lipid) desaturase
6	GGAGGCTGAG	185973	membrane fatty acid (lipid) desaturase
6	GGAAGTTTCG	55847	ESTs, Weakly similar to T12G3.5 [C.elegans]
6	GCTTAGAAGT	180532	heat shock 90kD protein 1, alpha
6	GCTGTCATCA	4745	proteasome (prosome, macropain) 26S subunit, ATPase, 1
6	GCTAGGTTTA	mito	Tag matches mitochondrial sequence
6	GCGAAACCCC
6	GCCTGGGCTG	112184	DKFZP586J0619 protein
6	GCCTGGGCTG	112184	DKFZP586J0619 protein
6	GCCCCCAATA	227751	lectin, galactoside-binding, soluble, 1 (galectin 1)
6	GAGAAACCCC	105133	ESTs
6	GAGAAACCCC	105133	ESTs
6	GAGAAACCCC	105133	ESTs
6	GACAATGCCA	155433	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1
6	GAATGAGGAC	167791	reticulocalbin 1, EF-hand calcium binding domain
6	GAATCGGTTA	80595	NADH dehydrogenase (ubiquinone) Fe-S protein 5 (15kD) (NADH-coenzyme Q reductase)
6	CTGGGCGTGT	108946	ESTs
6	CTGGCTGCAA	1342	cytochrome c oxidase subunit Vb
6	CTCAACAGCA	7811	eukaryotic translation initiation factor 3, subunit 5 (epsilon, 47kD)
6	CGGATAACCA	5181	proliferation-associated 2G4, 38kD
6	CGATGGTCCC	7771	B-cell associated protein
6	CCTCAGGATA
6	CCTCAGGATA
6	CCCTCCTGGG	95867	Homo sapiens EST00098 gene, last exon
6	CCACTACACT	83429	tumor necrosis factor (ligand) superfamily, member 10
6	CAGGATCCAG	119222	suppression of tumorigenicity 13 (colon carcinoma) (Hsp70-interacting protein)
6	CACGCAATGC	244	amino-terminal enhancer of split
6	ATGCGAAAGG	89466	dodecenoyl-Coenzyme A delta isomerase (3,2 trans-enoyl-Coenzyme A isomerase)
6	AGGGTGAAAC	77608	splicing factor, arginine/serine-rich 9
6	AGGAGCAAAG	76289	biliverdin reductase B (flavin reductase (NADPH))
6	AGCCCTCCCT	74111	RNA-binding protein (autoantigenic)
6	AGCCACCACG	48403	ESTs
6	AGAATTGCTT
6	AGAATTGCTT
6	AGAATCGCTT	75887	coatomer protein complex, subunit alpha
6	ACTTGGAGCC	177656	calmodulin 1 (phosphorylase kinase, delta)
6	ACCAAGGAGG	80598	transcription elongation factor A (SII), 2
6	ACCAAGGAGG	80598	transcription elongation factor A (SII), 2
6	ACCAAGGAGG	80598	transcription elongation factor A (SII), 2
5	TTAGCCAGGA	136620	ESTs, Moderately similar to !!!! ALU SUBFAMILY SQ WARNING ENTRY !!!! [H.sapiens]
5	TGTGGCCTCC	5258	ESTs, Weakly similar to B0414.8 [C.elegans]
5	TGGAGTGGAG	3764	guanylate kinase 1
5	TGAGGCCTCT	236068	ESTs
5	TCTCTTTTTC	119529	epididymal secretory protein (19.5kD)
5	TCTCCAGGAA	237924	ESTs, Highly similar to CGI-69 protein [H.sapiens]
5	TCGTAACGAG	11197	ESTs
5	TCGAAGCCCC	mito	Tag matches mitochondrial sequence
5	TCAGCCTTCT	179986	flotillin 1
5	TATCACTCTG	259700	male-enhanced antigen
5	TAGGATGGGG	76941	ATPase, Na+/K+ transporting, beta 3 polypeptide
5	GTTGTGGTTA	75415	beta-2-microglobulin
5	GTGGCAGGCG	48604	DKFZP434B168 protein
5	GTGGCAGGCG	48604	DKFZP434B168 protein
5	GTGGCACGTG
5	GTGGCACACG	192023	eukaryotic translation initiation factor 3, subunit 2 (beta, 36kD)
5	GTGCTGGACC	179774	proteasome (prosome, macropain) activator subunit 2 (PA28 beta)
5	GTCTCACGTG	261716	transcription factor binding to IGHM enhancer 3
5	GTACTGTATG	4278	KIAA0999 protein
5	GTACTGTATG	4278	KIAA0999 protein
5	GGTGTATATG	3439	stomatin-like protein 2
5	GGTGAGACAC	164280	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6
5	GGGTGTGGTG	25894	ESTs, Highly similar to hypothetical protein [H.sapiens]
5	GGGGGTAACT	99969	fusion, derived from t(12;16) malignant liposarcoma
5	GGGCAGCTGG	105606	ESTs
5	GGCTTTAGGG
5	GGCCAGCCCT	155455	phosphofructokinase, liver
5	GGCCAGCCCT	155455	phosphofructokinase, liver
5	GGAGGCAGGT	206713	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2
5	GCTAAGGAGA	268134	ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)
5	GCGACCGTCA	183760	aldolase A, fructose-bisphosphate
5	GCCTGGGACT	98057	ESTs
5	GAGTCAGGAG	181271	ESTs, Highly similar to CGI-120 protein [H.sapiens]
5	GAGTAGAGAA	145279	SET translocation (myeloid leukemia-associated)
5	GAGCCTTGGT	183994	protein phosphatase 1, catalytic subunit, alpha isoform
5	GACTAGTGCG	181551	ESTs
5	GAAGGCATCC	250758	proteasome (prosome, macropain) 26S subunit, ATPase